Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E21
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    27   0.24 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.1  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 290 VNFFAIENVKKTRTKHTVKY*DIHNPISQQLSISVTAVGL 409
           + F  +  V + R  H V Y    NP++Q+L   ++ +G+
Sbjct: 348 LEFVCVNYVGRKRPMHNVVYRPGENPVTQRLPAVLSRIGI 387


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 290 VNFFAIENVKKTRTKHTVKY*DIHNPISQQ 379
           + F  +  V + R  H V Y    NP++Q+
Sbjct: 379 LEFVCVNYVGRKRPMHNVVYRPGENPVTQK 408


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 290 VNFFAIENVKKTRTKHTVKY*DIHNPISQQ 379
           + F  +  V + R  H V Y    NP++Q+
Sbjct: 399 LEFVCVNYVGRKRPMHNVVYRPGENPVTQK 428


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 290 VNFFAIENVKKTRTKHTVKY*DIHNPISQQ 379
           + F  +  V + R  H V Y    NP++Q+
Sbjct: 348 LEFVCVNYVGRKRPMHNVVYRPGENPVTQK 377


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 656 QKVWVPKAFFVRN 694
           +K+WVP  FF  +
Sbjct: 114 EKIWVPDTFFAND 126


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 259 LAANVGKLNTESLITGIWN 203
           LAA+VGK   E   TG+ N
Sbjct: 143 LAADVGKAGGEREFTGLGN 161


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 259 LAANVGKLNTESLITGIWN 203
           LAA+VGK   E   TG+ N
Sbjct: 143 LAADVGKAGGEREFTGLGN 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,209
Number of Sequences: 438
Number of extensions: 4153
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)