Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E20
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.91 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   1.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   2.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   6.4  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   8.5  

>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +1

Query: 226  GDTPLEEINPDLAEAFNALP-AGRSAGKDVEAAPEIPEHYSSKLNVPEN 369
            G   + E+   +   F  L  AG  AG  +E  PEIP+H     N   N
Sbjct: 1379 GSESMAEVMESIKNVFMILHGAGALAGPTIEVDPEIPDHLIKTWNTTWN 1427


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 400 IFKSGYHQFLGFRAH*VLMSSVREFLGLLRHLYQR 296
           + +SG+ Q LG       M S REF  + +HLY +
Sbjct: 117 LLESGFSQPLGLNNR--FMPSTREFAAIFKHLYNK 149


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +2

Query: 200 VTCPFTSGAETRPSKKSILIWLKLSTLCPPEEALVKMSKQPQKFPNTTHQNLMCPKTQ 373
           + CP    +  R   K+   WL    +   ++++VK  K+  K  + TH +L  P  +
Sbjct: 811 ICCPLQEVSLVRNLVKTAQQWLDKFAIIFKKKSMVKKEKRKPKRGSATHSHLESPSEE 868


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -2

Query: 523 IESINKKGIS*TNLLHTKINLKNSIIYVKNLSYLSPLREISIFKSGYHQFLG 368
           +ES NKK  +  NLL  K+N KN+       S+ + +RE  + K   +  LG
Sbjct: 748 LESKNKKLENDLNLLTEKLNKKNA----DTESFKNTIREAELSKKALNDNLG 795


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 187 PQAPGYVPVYIRSGDTPLEEINP----DLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKL 354
           PQ    +  Y+ +GD PL++       D+ EA +  P   +    V  A  IP+ + S L
Sbjct: 156 PQLDSMIQEYLSNGDLPLQQSTEDYVYDIYEASSKEPNKPTFAYGVIDALSIPDAFRSSL 215

Query: 355 NVPENPEIGDS 387
                 E  DS
Sbjct: 216 EQELVSETVDS 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,293
Number of Sequences: 5004
Number of extensions: 54315
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)