Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E16
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   4.1  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    26   7.1  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.1  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   7.1  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.4  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   9.4  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   9.4  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 380  NSSNLYEKHDSTWKGKIRINGNFIGRTNLVL---EVKRDADTFSVTNGTVPVVI 532
            NS+ L+E+H    +  I+ +   + R        EVK + D F V   TVP  +
Sbjct: 1340 NSTLLWERHPIAMRSAIKTHNTIMRRQLRATGGYEVKTEGDAFMVCFQTVPAAL 1393


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 378 HSAQASCSFCELILNASFNSKPEPSIDTSTYLYSSILT 265
           HSA+ +C    + L  SFN+ P    D  T +Y + L+
Sbjct: 112 HSAKQNCDVEVVYLGGSFNAFPPLQNDRITVVYMNELS 149


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 615 VRCTGRRCVTSSSDRSDPP*EWSDNSFLCHSVPSVWAT*YSRTRP 749
           + CT    + S S   D    W DNSF  +  P ++ +   R +P
Sbjct: 265 IACTTDTVLLSKSSLYDLALYWPDNSFNANKYPQIFNSNSIRIKP 309


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 251 PPSIIVKMDEYKYVDVSIEGSGLELNDAFKIS 346
           P ++IVK  +++Y  V+ E  GL++ D    S
Sbjct: 522 PEAVIVKNSKFRYQQVAPETFGLDILDILNAS 553


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 158 WPLHLIVLYVLALCPLWVICQNVPRLTAVFSPPSII 265
           +PL+ +V +V  LC L+ I  +    T      SI+
Sbjct: 31  YPLYCVVCFVSVLCRLYCILMSAASATQTICDQSIL 66


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 717 PKELSGIKRNCPTIPMAGPIGRLMTSRTVGQCIAHPKLI 601
           PK L+G   N P     GP GR ++    G   +  K++
Sbjct: 18  PKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSKVV 56


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 615 VRCTGRRCVTSSSDRSDPP*EWSDNS 692
           V  T     TSSS RSD P EW++++
Sbjct: 146 VTATTSNISTSSSHRSDLPNEWTNST 171


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 385 VEPLREARQHVEGQDTHQWKFYR*DKLGTGS 477
           + P R+A+ + + Q    + FY  DK  TGS
Sbjct: 181 LSPFRDAKGNYDWQKELDYSFYMLDKQSTGS 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,206
Number of Sequences: 5004
Number of extensions: 76572
Number of successful extensions: 317
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)