Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E15
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.049
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.79 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.1 bits (62), Expect = 0.049
 Identities = 41/216 (18%), Positives = 85/216 (39%), Gaps = 1/216 (0%)
 Frame = +1

Query: 115  STVRQLERKXLAEKLSKEADLKEQQRRTELEAMRRVEEEFQRKRAREKANIRQQLRLVSS 294
            S +R L+ +     + ++   ++QQ++ + +  ++ +++ Q+ +ARE+  +   +   S+
Sbjct: 1193 SRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQ-QQHQAREREGVGAGIAETSA 1251

Query: 295  GAASMPTTTPHSKA-RDEPDGSCRDSPAAERSRDSRQRHSNASSEISARSKSTTPIRCVE 471
            G ++       SK  RD  +G    S A     D+  R S+  + I    ++ T  R  +
Sbjct: 1252 GTSNSRGAAQMSKVPRDVSEGIYDGSGANGSFLDNLIR-SSLETGIPRDQRAMTEARNQQ 1310

Query: 472  LSEWRTERAGRVYRDWAAAQAHDHPPATARMPKSTQALYNAAETEAFSGSPRSDNYRLEF 651
                  ++     R  A             +P+  Q   +++E E++ G   S    +  
Sbjct: 1311 QQASSQQQIPESMRSKALIDQLCRNSRRTPVPRLAQ---DSSEDESYRGPSASGGRPVPE 1367

Query: 652  ARGRSPRTPRAPRLVAAGRTPSSSGSELSLXQPIKI 759
               R P    +P     GR    S    S   P+ I
Sbjct: 1368 RPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSI 1403



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 204  GGHAEGRRRVPT*ACEGEGEYQTTAPAGEQWSRQHAHHHPTL 329
            GG  E R R    +   + + Q      +Q  +Q  +H+P L
Sbjct: 1432 GGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDL 1473


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 23/116 (19%), Positives = 44/116 (37%)
 Frame = +1

Query: 67  TQSSNQQGRAXRFTFQSTVRQLERKXLAEKLSKEADLKEQQRRTELEAMRRVEEEFQRKR 246
           T S++ + R   F   S+    ER+   ++  +      Q  +   E  + +EE   RKR
Sbjct: 212 TSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKR 271

Query: 247 AREKANIRQQLRLVSSGAASMPTTTPHSKARDEPDGSCRDSPAAERSRDSRQRHSN 414
              ++  R+Q    +  +      T   ++RD  +      P    S  +   H+N
Sbjct: 272 -YSRSREREQRSYKNENSYRKYRETSKERSRDRIERERSREPKIISSLSNNTIHNN 326


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 250 REKANIRQQLRLVSSGAASMPTTT 321
           R++ NIR  ++ + + AA  P TT
Sbjct: 336 RQENNIRPMVKQIDTVAAEWPATT 359


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 297 STAHQPELLSDIRLLPRTLTLELF 226
           +  +  E L +I+  PRTLTL +F
Sbjct: 480 AATYMNECLLNIQKSPRTLTLGIF 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,251
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)