Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E07
         (512 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 143 TTAMARNIKDNNNIDPATLLSNVKST 220
           T + +   +D   +DP  ++SN KST
Sbjct: 430 TASGSNEDEDETPLDPVVVISNDKST 455


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 355  DCTQACLGDQTFGHICQQHKSM 290
            DCT A    QT  HI Q H  M
Sbjct: 1074 DCTMAEDVYQTLKHIIQTHGEM 1095


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 152 MARNIKDNNNIDPATLLSNVKSTIK 226
           + RN++ ++ +D  TLL++   +IK
Sbjct: 146 LIRNLRQSSALDGVTLLADNSVSIK 170


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 264 WKWFSNSSFITSF 226
           W W S SSF   F
Sbjct: 414 WMWLSCSSFFQQF 426


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 367 LCLFDCTQACLGDQTFG 317
           L LF CT +C+    +G
Sbjct: 301 LFLFACTNSCMNPIVYG 317


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 307 QQHKSMWGNLGF 272
           QQ  S WG LGF
Sbjct: 334 QQWNSYWGILGF 345


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 307 QQHKSMWGNLGF 272
           QQ  S WG LGF
Sbjct: 334 QQWNSYWGILGF 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,604
Number of Sequences: 438
Number of extensions: 1841
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)