Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_E05
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 167 1e-42
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 29 1.0
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 29 1.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 5.5
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.5
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.2
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 7.2
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 167 bits (407), Expect = 1e-42
Identities = 77/194 (39%), Positives = 116/194 (59%), Gaps = 8/194 (4%)
Frame = +1
Query: 241 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 420
L +++C++VDE D + TK+ECH + LLHRAFS+F+F+++ + LQ+R+ +K+
Sbjct: 17 LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76
Query: 421 TYPDYYTNACCSHPLYI--------DEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 576
T+P +TN CCSHPL + E E + AA+R++ HELGI + + F F+T
Sbjct: 77 TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136
Query: 577 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITP 756
R+HY P G WGEHEID+ILFF+ V++ N +E+ Y +V E + TP
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYGFTP 196
Query: 757 WFXMIRRHRLKLWW 798
WF +I H + WW
Sbjct: 197 WFKLICEHFMFKWW 210
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 256 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 348
C++VDE DN I +A R PDGDV H
Sbjct: 34 CIIVDENDNVIMSAGNRV-----PDGDVTQH 59
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 1.0
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +1
Query: 469 IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGV--WGEHEIDHILF 642
++ +PE + ++ + I D P F FM V Y G+ I +IL+
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILY 322
Query: 643 FQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 747
V + PN +I+ CF F + P LE P
Sbjct: 323 --GPVPLDPNV-KIAIVCFDRSVNFFNLSPNLEQP 354
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.4
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = -2
Query: 344 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNL 165
SS+S S + S +VP+ S SS+ S S +S+ ++SRPS S + T +
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS-SSSSFITTMSSSTF 249
Query: 164 FSTLRVLHS 138
ST+ V S
Sbjct: 250 ISTVTVTPS 258
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 562 FTFMTRVHYHDPGDGVW 612
+TFMT H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 719 LNSALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 603
L++ + Y++I +EFG W + + ISC+ P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 7.2
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 278 SFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNLFSTLRVLHSXLVSFLT 117
S S +++SLS + + RP + + FTGSE +LF L + L+ FL+
Sbjct: 76 SLSINPKKLSLSFSFPLSQKRPFPNFLHPFTGSEL-SLFRCLLLFFFFLLFFLS 128
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 791 SFNRWRRIMXNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLTSL 648
SFN R + NH PSK +N +++ + SS F L LT +
Sbjct: 191 SFNT-RSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,522
Number of Sequences: 5004
Number of extensions: 68169
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -