Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E02
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    37   0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    33   0.029
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    33   0.029
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    33   0.051
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    32   0.067
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.47 
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    28   1.1  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   1.9  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.5  
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    27   3.3  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    26   5.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.8  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   7.7  

>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 21/77 (27%), Positives = 38/77 (49%)
 Frame = +3

Query: 231 YHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCV 410
           YH   HG       +YVGNL W  +D+++ +  +D+G      + +      G+SKGF V
Sbjct: 270 YHAYPHGPCSDC--IYVGNLPWATSDRNLLDLFTDIGSVIRARIAY---EPTGRSKGFGV 324

Query: 411 ISLGSDQSVRMVMERLS 461
           +   ++      +E+L+
Sbjct: 325 VQFENENDAASSIEKLN 341


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = +3

Query: 246 HGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGS 425
           H  +     +Y+GNL +   + DI    S+ G  +  D+    ++  G+SKGF  +    
Sbjct: 24  HQDYSDSAYIYIGNLDFDLNEDDILCVFSEFG--EPVDINLVRDKETGKSKGFAFLKYED 81

Query: 426 DQSVRMVMERLSKKEI 473
            +S  + ++ ++  ++
Sbjct: 82  QRSTVLAVDNMTNVKL 97


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +3

Query: 207 EETNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRAN 386
           E    NA    P +   G+ F   +G L W  TD  + +     G  +  D     +   
Sbjct: 146 ESNEDNAEETSPFNREDGKMF---IGGLNWETTDDSLRDYFEQFG--EVLDCTVMRDSTT 200

Query: 387 GQSKGFCVISLGSDQSVRMVMER 455
           G+S+GF  ++  + + V  VM +
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSK 223


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +3

Query: 270 QLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVM 449
           ++Y+ NL     +  +   +   G  D    +  +N A+G SKGFC     +     + +
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFG--DLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAI 368

Query: 450 ERLSKKEIHG 479
             L  K+ +G
Sbjct: 369 SGLDGKDTYG 378


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 32.3 bits (70), Expect = 0.067
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 132 VISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGP 242
           V  APA  PE     P IAP+Q  P +TN +A+Y  P
Sbjct: 296 VTPAPAPAPESEPSKPSIAPSQ--PSKTNVSAAYEKP 330


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +3

Query: 273 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 452
           ++VG L+W   DQ +     + G       +   +  +G+SKG+  +   + ++ +  + 
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGT--IVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322

Query: 453 RLSKKEIHGQ 482
               KEI G+
Sbjct: 323 ANGTKEIDGR 332


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 273 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 452
           L+VGNL +  TD D+      VG    + V+       G+ KGF  +      +    ME
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVG--QIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 1/147 (0%)
 Frame = +3

Query: 45  DIDLYADD-IESDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNG 221
           D+   AD  +ESD N  +E    +         +  ++PE     P  A        T  
Sbjct: 5   DLKKQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPT 64

Query: 222 NASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKG 401
           NAS      G       LYVG L    T+  +    + +G      ++   +    +S G
Sbjct: 65  NASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIG--PVASIRVCRDAVTRRSLG 122

Query: 402 FCVISLGSDQSVRMVMERLSKKEIHGQ 482
           +  ++  + +     ++ L+   I G+
Sbjct: 123 YAYVNFHNMEDGEKALDELNYTLIKGR 149


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 39  DVDIDLYADDIESDFNRQDEFAGENVDLYDDVISAPASKPEDGD 170
           D DID Y  D E+++   +E  GE+++  D+ +       EDGD
Sbjct: 335 DEDID-YTYDSEAEWVADEEDDGEDLESEDEEVDNSDDIVEDGD 377


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +3

Query: 303 TDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSD-QSVRMVMERLSKKEIHG 479
           +D D  +A+S    SD + +   E   N   +   ++ L  D Q +++++E+     ++ 
Sbjct: 417 SDDDFMHALSLSTNSDGETLN--EINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTLNN 474

Query: 480 --QHPVVTLPTKQA---LNQFESQSKTRST 554
             Q  +  LP   +   LN+FES+  T ST
Sbjct: 475 FQQRKLTPLPNSMSFDSLNEFESERNTPST 504


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -1

Query: 224 VAVSFLRWMLVWSNDGRTVTVLGLRSWC*DHVVI*IHIFASKFILAIKIGFYIIGVQIY 48
           VA   L+W  VW N    V V+     C   V + +       IL  K+ +   GV ++
Sbjct: 71  VAPHLLKWTCVWPNQSSHVEVIDYNIECKKTVALSMDSITKTCILNYKLEWTYSGVLLH 129


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 273 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 452
           +YVGNL+++ T++ I    S  G  + + +    +R      GFC +    +Q     ++
Sbjct: 34  VYVGNLSFYTTEEQIYALFSKCG--EIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLK 91

Query: 453 RLSKKEI 473
            +S+  +
Sbjct: 92  YISRTSL 98


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 165 GDGPPIIAPNQHPPEETNGNASYH 236
           G  P        PP E NGN S+H
Sbjct: 271 GSKPKSFKRKHSPPSEENGNLSFH 294


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +3

Query: 123 YDDVISAPASKPEDGDGPPIIAPNQH-----PPEETNGNASYHG 239
           +D   S P+S PE+G  P  +  N H     P   TN  +  HG
Sbjct: 269 FDMTPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHG 312


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 33  DGDVDIDL-YADDI---ESDFNRQDEFAGENVDLYDDVISAPASKPEDGD 170
           DGDV+I+    DD    E DF  +D+F G+      ++ S  A   E+ D
Sbjct: 119 DGDVEIENPEVDDYQVSEHDFGLEDDFNGDGCQQMIEIESDEAISEEEED 168


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 24  KMADGDVDIDLYADDIESDFNRQDEFAGENVDLYDDVISAPASKP 158
           K+  GDV  ++  D  + DF +QDE     + +       P  KP
Sbjct: 80  KIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKP 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,701
Number of Sequences: 5004
Number of extensions: 58190
Number of successful extensions: 188
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)