Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_E02
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68160-1|CAA92294.2| 489|Caenorhabditis elegans Hypothetical pr... 98 4e-21
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 41 7e-04
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 33 0.19
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 33 0.19
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 32 0.44
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 32 0.44
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 0.77
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 0.77
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 4.1
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 28 5.4
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 28 5.4
Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 28 7.1
AL031630-17|CAA20998.1| 198|Caenorhabditis elegans Hypothetical... 28 7.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 9.4
AF098995-10|AAC67487.2| 411|Caenorhabditis elegans Hypothetical... 27 9.4
AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical ... 27 9.4
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 27 9.4
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 27 9.4
AC006723-3|AAF59427.1| 881|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z68160-1|CAA92294.2| 489|Caenorhabditis elegans Hypothetical
protein D1046.1 protein.
Length = 489
Score = 98.3 bits (234), Expect = 4e-21
Identities = 60/149 (40%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Frame = +3
Query: 117 DLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLYVGNLTW 296
DLYD+ I AP + E P+ T G + P GR++ YVGNL W
Sbjct: 39 DLYDEAI-APTNSTESAK--PVSPTITTVTAPTAGIGAK--PATSSEGRKYCCYVGNLLW 93
Query: 297 WATDQDIANAISDVGV--SDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMERLSKKE 470
+ TD D+ A+ G+ S F D+KFFENR NGQSKG+ ++ L SD +V+ ME L K
Sbjct: 94 YTTDADLLKALQSTGLARSQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 153
Query: 471 IHGQHPVVTL--PTKQA-LNQFESQSKTR 548
IHGQ P V T QA L +++++TR
Sbjct: 154 IHGQSPTVLSYNKTNQAKLEDAQAKNQTR 182
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = +3
Query: 267 FQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMV 446
F +YVGN+ + T+++I N + VG +V+ +R G+ +GF + + +
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAAVG--HVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRA 63
Query: 447 MERLSKKEIHGQHPVVTLPTK 509
+E+L+ +G++ V K
Sbjct: 64 VEQLNGVAFNGRNLRVNYANK 84
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 216 NGNASYHGPVHGHHGRRFQ---LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRAN 386
NGNAS +GH + + ++VG ++ ++D+++ + G VK+ +R N
Sbjct: 9 NGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKY--DRTN 66
Query: 387 GQSKGFCVISLGSDQSVRMVM 449
G+S+GF + + + ++ +
Sbjct: 67 GRSRGFAFVEFTTGEGCKLAL 87
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +3
Query: 216 NGNASYHGPVHGHHGRRFQ---LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRAN 386
NGNAS +GH + + ++VG ++ ++D+++ + G VK+ +R N
Sbjct: 9 NGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKY--DRTN 66
Query: 387 GQSKGFCVISLGSDQSVRMVM 449
G+S+GF + + + ++ +
Sbjct: 67 GRSRGFAFVEFTTGEGCKLAL 87
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 78 DFNRQDEFAGENVDLYDDV----ISAPASKPEDGDGPPIIAPNQHPPEETNGNAS 230
D NR+D+ ++DL ++ SA A++P D PP + P +H P + + NAS
Sbjct: 311 DHNRRDQL--NSLDLLEEGKFNNASANATRPRPPDIPPPLPPIEHVPRKKSRNAS 363
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +3
Query: 78 DFNRQDEFAGENVDLYDDV----ISAPASKPEDGDGPPIIAPNQHPPEETNGNAS 230
D NR+D+ ++DL ++ SA A++P D PP + P +H P + + NAS
Sbjct: 335 DHNRRDQL--NSLDLLEEGKFNNASANATRPRPPDIPPPLPPIEHVPRKKSRNAS 387
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 273 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 452
L + NL++ T D+ G D DV ++ + QSKGF + + ++
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYG--DIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 453 RLSKKEIHGQHPVVTL 500
R K + G+ VTL
Sbjct: 79 RTDGKLVDGRELRVTL 94
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.1 bits (67), Expect = 0.77
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 273 LYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVME 452
L + NL++ T D+ G D DV ++ + QSKGF + + ++
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYG--DIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 453 RLSKKEIHGQHPVVTL 500
R K + G+ VTL
Sbjct: 79 RTDGKLVDGRELRVTL 94
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.1 bits (62), Expect = 3.1
Identities = 34/164 (20%), Positives = 63/164 (38%)
Frame = +3
Query: 60 ADDIESDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHG 239
ADD D N + E GE V L ++ G G + P G +
Sbjct: 48 ADDAVHDLNGK-ELCGERVILEFPRRKVGYNEERSGSG----FRGREPTFRKGGERQFSN 102
Query: 240 PVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISL 419
RF+L + NL+ + QDI + I +G+ + A+ ++ ++
Sbjct: 103 RYSRPCSTRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTY------SEAHKRNVNQAIVCF 156
Query: 420 GSDQSVRMVMERLSKKEIHGQHPVVTLPTKQALNQFESQSKTRS 551
S +R M +L ++++G+ T T+ + ++RS
Sbjct: 157 TSHDDLRDAMNKLQGEDLNGRKLKCTDETRDRSRSRSPRRRSRS 200
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 153 KPEDGDGPPIIAPNQHPP-EETNGNASYHGP-VHGH 254
+P PP+ A Q PP E+NG+ H HGH
Sbjct: 277 QPPTSYAPPVAATQQQPPVSESNGHGHSHADGGHGH 312
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 369 RTSHLENRRHRHPRSRSQYLGPLPTMLG 286
RTS+ NRR H RS+ +Y+ P+ +++G
Sbjct: 918 RTSYNSNRRPSHSRSQDEYV-PIDSVIG 944
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 369 RTSHLENRRHRHPRSRSQYLGPLPTMLG 286
RTS+ NRR H RS+ +Y+ P+ +++G
Sbjct: 918 RTSYNSNRRPSHSRSQDEYV-PIDSVIG 944
>Z68342-3|CAA92773.1| 751|Caenorhabditis elegans Hypothetical
protein F38E11.4 protein.
Length = 751
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 42 VDIDLYADDIESDFNRQDEFAGENVDLYDDVISAPAS-KP--EDGDGPPIIAPNQHPPEE 212
+D + DI S F+R +EF N Y D I PA KP + PP + N EE
Sbjct: 358 MDDECQLSDI-SQFSRPNEFVVANFTDYFDKICDPADPKPMLTTPETPPELIQNSVDEEE 416
Query: 213 TNGNAS 230
T S
Sbjct: 417 TTSERS 422
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +3
Query: 75 SDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGH 254
SD ++E + D YDD+ AP PE + I N PP N + P H H
Sbjct: 194 SDSEEEEEEVHD--DHYDDIDLAPVPIPEFDNPYQPIHRNYGPPSSYNSMPT-RMPHHHH 250
Query: 255 H 257
H
Sbjct: 251 H 251
>AL031630-17|CAA20998.1| 198|Caenorhabditis elegans Hypothetical
protein Y38H6C.19 protein.
Length = 198
Score = 27.9 bits (59), Expect = 7.1
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Frame = +3
Query: 48 IDLYADDIESDFNRQDE----------FAGENVDLYDDVISAPA--SKPEDGDGPPIIAP 191
I L+ +I DFN+Q+E + G+N+ + +I A S P++G G + A
Sbjct: 67 IALFCKNIGGDFNKQNEIKSGEGAWGEWQGDNICPNNLLIIGFALQSNPDEGKGDDVGA- 125
Query: 192 NQHPPEETNGNASYHGPVHGHHGRRFQLYVGNLTWWAT 305
N A++ GP HG + +L +GN W T
Sbjct: 126 --------NNFAAFCGPPHGARNKDIEL-LGNAMSWGT 154
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 186 APNQHPPEETNGNASYHGPV-HGHHG 260
AP H E++G+ +H P HGHHG
Sbjct: 435 APAHHGHHESHGHG-HHSPAHHGHHG 459
>AF098995-10|AAC67487.2| 411|Caenorhabditis elegans Hypothetical
protein F58E1.10 protein.
Length = 411
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +3
Query: 42 VDIDLYADDIESDF---NRQDEFAGENVDLYDDVIS 140
VD+D+ + S+ NR +EFA N+D D+I+
Sbjct: 80 VDMDMQVEQKSSEILVDNRSEEFARSNIDYEQDLIT 115
>AF014939-3|AAB63927.1| 831|Caenorhabditis elegans Hypothetical
protein ZC132.4 protein.
Length = 831
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 432 SVRMVMERLSKKEIHGQHPVVTLPTKQALNQFESQSKTRS 551
S+R+++E LSK+++H + + +N ES+ R+
Sbjct: 650 SIRLILETLSKRDLHNPQKQNEAISMEVINHEESERLPRT 689
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 309 QDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSV 437
+D+ S VG +DV+ + G+SKG C + ++SV
Sbjct: 39 RDLEEFFSAVGA--VRDVRIITDSRTGRSKGICYVEFWDEESV 79
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 309 QDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSV 437
+D+ S VG +DV+ + G+SKG C + ++SV
Sbjct: 184 RDLEEFFSAVGA--VRDVRIITDSRTGRSKGICYVEFWDEESV 224
>AC006723-3|AAF59427.1| 881|Caenorhabditis elegans Hypothetical
protein Y19D10B.4 protein.
Length = 881
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 235 TARFTDIMAAVFNFTSAT*HGGQRTKILRTRSRMSVSPIFKM*SSLRTEPMVSPKD 402
T R + V FT+AT T+I+ RS PIF ++L+T + P D
Sbjct: 716 TVRQKTSVGLVLGFTAATNDDNASTQIISQRSSSDSQPIF---TTLKTTNHIVPTD 768
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,593
Number of Sequences: 27780
Number of extensions: 346800
Number of successful extensions: 1259
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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