Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_E01
(807 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 121 2e-26
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 116 9e-25
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 99 2e-19
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 95 1e-18
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 90 5e-17
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 89 2e-16
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 86 1e-15
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 85 3e-15
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 81 2e-14
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 80 7e-14
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 77 7e-13
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 74 4e-12
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 73 1e-11
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 69 1e-10
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 67 4e-10
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 64 3e-09
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 61 3e-08
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 61 4e-08
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 61 4e-08
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 58 3e-07
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 57 5e-07
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 55 2e-06
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 55 2e-06
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 54 4e-06
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 52 1e-05
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 48 3e-04
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14; ... 48 3e-04
UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12; ... 47 5e-04
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 47 6e-04
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 45 0.002
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 45 0.003
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 44 0.003
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 44 0.005
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 44 0.006
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 44 0.006
UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 43 0.008
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 42 0.014
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 42 0.014
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 42 0.018
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 42 0.018
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 42 0.024
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 41 0.032
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 41 0.042
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.042
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 40 0.056
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 40 0.056
UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;... 40 0.074
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 40 0.074
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.074
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 40 0.097
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 40 0.097
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 39 0.13
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 39 0.17
UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 39 0.17
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 39 0.17
UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 39 0.17
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 39 0.17
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.17
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 38 0.23
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 38 0.23
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 38 0.23
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 38 0.23
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 38 0.30
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 38 0.30
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.30
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 38 0.30
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 38 0.30
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 38 0.30
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 38 0.39
UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep: At4g... 37 0.52
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 37 0.52
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.52
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 37 0.52
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 37 0.69
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 37 0.69
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 37 0.69
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 37 0.69
UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2; ... 36 0.91
UniRef50_A6RWH0 Cluster: Predicted protein; n=10; Pezizomycotina... 36 0.91
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 36 0.91
UniRef50_Q0UHH8 Cluster: Predicted protein; n=2; Pezizomycotina|... 36 1.2
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 1.2
UniRef50_Q6BIX4 Cluster: Similar to CA2640|IPF2930 Candida albic... 36 1.6
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 36 1.6
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 36 1.6
UniRef50_Q54HH8 Cluster: Putative small nuclear ribonucleopartic... 35 2.1
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 35 2.1
UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 35 2.8
UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear ri... 35 2.8
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 35 2.8
UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genom... 34 3.7
UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein, put... 34 3.7
UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;... 34 3.7
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.7
UniRef50_A2Q9H8 Cluster: Contig An01c0290, complete genome; n=2;... 34 3.7
UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lambl... 34 4.8
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 34 4.8
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 34 4.8
UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 4.8
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 34 4.8
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 33 6.4
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 33 6.4
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 33 6.4
UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe gri... 33 6.4
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 33 6.4
UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 33 6.4
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 33 8.5
UniRef50_Q0M0F8 Cluster: YhhN-like; n=1; Caulobacter sp. K31|Rep... 33 8.5
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 33 8.5
UniRef50_Q4N780 Cluster: Putative uncharacterized protein; n=2; ... 33 8.5
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 33 8.5
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 121 bits (292), Expect = 2e-26
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 116 bits (278), Expect = 9e-25
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK +RE
Sbjct: 10 VGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPERE 69
Query: 288 EKRTLGFVLLRGENIVSLTI 347
EKR LG VLLRGEN+VS+T+
Sbjct: 70 EKRVLGLVLLRGENLVSMTV 89
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 98.7 bits (235), Expect = 2e-19
Identities = 47/78 (60%), Positives = 54/78 (69%)
Frame = +3
Query: 111 GKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 290
GKN +QQ L VRV ++ R F+GTF AFDKHMNL+L DCEEFR K K E
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL 62
Query: 291 KRTLGFVLLRGENIVSLT 344
KRTLGF++LRGENIVS T
Sbjct: 63 KRTLGFIMLRGENIVSFT 80
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 95.5 bits (227), Expect = 1e-18
Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNSK 272
M + K++ + Q +N +RV +Q R IG F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 273 TADREEKRTLGFVLLRGENIVSLTI 347
+REE+RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 90.2 bits (214), Expect = 5e-17
Identities = 47/81 (58%), Positives = 55/81 (67%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
MP GKN +Q L VRV L+ +R F+GT A+DK+MNL+L DCEEFR K+
Sbjct: 1 MP-GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRT- 58
Query: 282 REEKRTLGFVLLRGENIVSLT 344
E KRTLGFVLLRGENIVS T
Sbjct: 59 -EVKRTLGFVLLRGENIVSFT 78
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 88.6 bits (210), Expect = 2e-16
Identities = 38/78 (48%), Positives = 58/78 (74%)
Frame = +3
Query: 114 KNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 293
K++ + Q++N +RV +Q R +G F AFDKHMN+++ D EEFR+I+ K + DREEK
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKE--DREEK 63
Query: 294 RTLGFVLLRGENIVSLTI 347
RTLG +L+RGE +VS+++
Sbjct: 64 RTLGMILIRGETVVSMSV 81
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 85.8 bits (203), Expect = 1e-15
Identities = 39/79 (49%), Positives = 57/79 (72%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+GKN+ L+ L VRV + +R F+GTF ++D+HMN++L D EEFRK+KS+ + +E
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSL--KE 58
Query: 288 EKRTLGFVLLRGENIVSLT 344
KR +G +L+RGENIVS T
Sbjct: 59 IKRVVGLILIRGENIVSFT 77
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 84.6 bits (200), Expect = 3e-15
Identities = 39/68 (57%), Positives = 47/68 (69%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ R LQ R FIG FKAFDKHMN IL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEKQTE 60
Query: 282 REEKRTLG 305
EEKR G
Sbjct: 61 CEEKRVFG 68
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/79 (45%), Positives = 56/79 (70%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+GKN L+ L VRV + +R ++GTF ++D+HMN++L D EEFR++K+K + +E
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNF--KE 58
Query: 288 EKRTLGFVLLRGENIVSLT 344
KR +G +L+RG+NIVS T
Sbjct: 59 IKRVVGLILIRGDNIVSFT 77
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 79.8 bits (188), Expect = 7e-14
Identities = 37/66 (56%), Positives = 47/66 (71%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+GK++ + H + +R LQ R FIGTFKAFDKHMN+I DC+EFRK+K KN+K RE
Sbjct: 43 VGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPARE 102
Query: 288 EKRTLG 305
EKR G
Sbjct: 103 EKRVSG 108
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 76.6 bits (180), Expect = 7e-13
Identities = 32/71 (45%), Positives = 50/71 (70%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
+Q+++N +RV +Q R +G AFD+HMNL+L DC+E+R++K +E KR+LG
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEE---PKELKRSLG 57
Query: 306 FVLLRGENIVS 338
++LRGENIV+
Sbjct: 58 LIMLRGENIVT 68
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 74.1 bits (174), Expect = 4e-12
Identities = 33/52 (63%), Positives = 41/52 (78%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIK 257
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 154
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 72.5 bits (170), Expect = 1e-11
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRTLGFVL 314
LN + V + RTF+G AFD MNL+L DC+E+R IK +N + EEKR LG V+
Sbjct: 10 LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVI 69
Query: 315 LRGENIVSLTI 347
LRGE IVSL++
Sbjct: 70 LRGEFIVSLSV 80
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 69.3 bits (162), Expect = 1e-10
Identities = 32/71 (45%), Positives = 48/71 (67%)
Frame = +3
Query: 132 QHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 311
Q ++ VR+ L R +GTF AFDKH+N+IL +CEE+R + + E KRTLG +
Sbjct: 9 QWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR---IRKQGIHEIETKRTLGMI 65
Query: 312 LLRGENIVSLT 344
++RG+NI+SL+
Sbjct: 66 IVRGDNIISLS 76
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 67.3 bits (157), Expect = 4e-10
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSK--------NSKTADREEK 293
+N +R+ L R G AFDKHMNL+L D EEFR++K K N+ + EEK
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEEK 190
Query: 294 RTLGFVLLRGENIVSLTI 347
RTLG ++RG ++VS ++
Sbjct: 191 RTLGLTIVRGTHVVSCSV 208
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/82 (34%), Positives = 49/82 (59%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M + + L + +N V+V + R F+G AFD H N++L DCEE+R++ + +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGEL- 59
Query: 282 REEKRTLGFVLLRGENIVSLTI 347
+E KR +G ++LRGE ++ + I
Sbjct: 60 QEAKRNIGLMILRGETVLHIDI 81
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 10/92 (10%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKS-----KN 266
+P+ K + ++ +++ +R FIG+ AFDKH+NL+L D EE R K K
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKSIVSMKK 63
Query: 267 SKTADRE-----EKRTLGFVLLRGENIVSLTI 347
S +D + +KR+LG ++LRGE IVSL+I
Sbjct: 64 SAGSDGKHDPTFDKRSLGLIILRGEQIVSLSI 95
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 60.9 bits (141), Expect = 4e-08
Identities = 28/78 (35%), Positives = 51/78 (65%)
Frame = +3
Query: 114 KNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 293
K++ + +++N ++V R F+G F AFDK+MN+IL + E R + +K ++ ++E +
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTR-EEKEIE 62
Query: 294 RTLGFVLLRGENIVSLTI 347
R+LG +LLRG+ I T+
Sbjct: 63 RSLGMMLLRGDCIQGYTV 80
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 60.9 bits (141), Expect = 4e-08
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK----TADRE---EKR 296
+N +++ +RT++GT +FDKHMNL+L D EE R K S+ T + E +KR
Sbjct: 5 INFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQLKKHTPNVELVYDKR 64
Query: 297 TLGFVLLRGENIVSLTI 347
LG ++LRG+ +VS TI
Sbjct: 65 NLGLIILRGDQVVSFTI 81
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 57.6 bits (133), Expect = 3e-07
Identities = 28/80 (35%), Positives = 49/80 (61%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+G+ + L ++N +R+ L R G +D+HMN++LGD E R+ ++K K A
Sbjct: 1 MGRESMLH-NINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESRE-ETKKMKEAGIS 58
Query: 288 EKRTLGFVLLRGENIVSLTI 347
+R+LG VLLRG +++S+ +
Sbjct: 59 PQRSLGLVLLRGVHVISVNV 78
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 57.2 bits (132), Expect = 5e-07
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = +3
Query: 99 KMPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 278
K+ + ++ L ++ +RV Q R +IG AFDKHMNL+L +C E R K++ K
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 279 DRE------------EKRTLGFVLLRGENIVSLTI 347
R+ EKR LG +LRGE I+S +
Sbjct: 63 PRKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVV 97
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +RV + RT IG+F DK N+ILG C+EF + S D+E+ R LG
Sbjct: 4 LESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLG---VDKEDPRILG 60
Query: 306 FVLLRGENIVSLTI 347
++ G +I S+ +
Sbjct: 61 LAMVPGRHIQSIEV 74
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 55.2 bits (127), Expect = 2e-06
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 9/87 (10%)
Frame = +3
Query: 114 KNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRK--------IKSKNS 269
K L ++ +RV R +IG AFD +MNL++GDC E R +KS +
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
Query: 270 KTAD-REEKRTLGFVLLRGENIVSLTI 347
+++ + E+RT G ++LRGE+++S ++
Sbjct: 69 LSSNVQVERRTFGLIILRGEHVLSTSV 95
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 54.0 bits (124), Expect = 4e-06
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +3
Query: 114 KNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 272
K + +N +R+ L SR +G AFD HMNL+L D +E+RK+KS+ +K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAK 59
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/75 (41%), Positives = 40/75 (53%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L LN V + L+ R F G K+FD HMNL+L D EE D E R
Sbjct: 16 DALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE----------DGEVTRR 65
Query: 300 LGFVLLRGENIVSLT 344
LG VL+RG+NIV ++
Sbjct: 66 LGTVLIRGDNIVYIS 80
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + R +G F D+ N+ILG C E+ + T EE R LG
Sbjct: 39 LRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTI--EEPRMLG 96
Query: 306 FVLLRGENIVSLTI 347
V++ G++I S+ I
Sbjct: 97 LVMVPGKHIQSVAI 110
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 48.0 bits (109), Expect = 3e-04
Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEK 293
LQ+ + V V L+ R+ G K FDK MN+++ + E + +S N+ +++ E++
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGKGQEQE 70
Query: 294 RTLGFVLLRGENIVSLTI 347
+G L+RG+N++++ +
Sbjct: 71 TQVGDALIRGDNVITIAV 88
>UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14;
Euteleostomi|Rep: LSM domain-containing protein 1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 109
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +KS +S + E R LG
Sbjct: 28 LENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEF--LKSTDS--LSQGEPRVLG 83
Query: 306 FVLLRGENIVSLTI 347
++ G ++VS+ +
Sbjct: 84 LAMIPGHHVVSIEV 97
>UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12;
Theria|Rep: LSM domain-containing protein 1 - Homo
sapiens (Human)
Length = 125
Score = 47.2 bits (107), Expect = 5e-04
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +K +S +A E R LG
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLG 100
Query: 306 FVLLRGENIVSLTI 347
++ G +IVS+ +
Sbjct: 101 LAMVPGHHIVSIEV 114
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 46.8 bits (106), Expect = 6e-04
Identities = 26/72 (36%), Positives = 38/72 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + R IG F D+ N+ILG C EF + D E RTLG
Sbjct: 36 LRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEF--------LSEDHTEARTLG 87
Query: 306 FVLLRGENIVSL 341
V++ G +IV++
Sbjct: 88 LVMIPGRHIVTI 99
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ +L+ V + L+ +RT +GT +AFD H N++L D E I N++ E+R
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESERR-CE 64
Query: 306 FVLLRGENIVSLT 344
V +RG+ + ++
Sbjct: 65 MVFIRGDTVTLIS 77
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 44.8 bits (101), Expect = 0.003
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ ++N V + R FIGT K FD+ +N+I+ +C E + T E+ LG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE------RVFSTTSGIEQIVLG 57
Query: 306 FVLLRGENI 332
++RG+NI
Sbjct: 58 LHIIRGDNI 66
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/69 (36%), Positives = 34/69 (49%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L +HLN V V R G + D NL+L D E+ K S +SK EKR LG
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTG--EKRNLG 74
Query: 306 FVLLRGENI 332
++ RG ++
Sbjct: 75 LLVARGTSV 83
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 44.0 bits (99), Expect = 0.005
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFR 248
+ L+ ++ +RV Q R ++GT AFD HMNL+L DC E R
Sbjct: 9 STLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEER 51
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
N +++ +N +RV R +G D NL+L EEF I+ N E+ R
Sbjct: 19 NDIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEF--IRDPNDSYVITEKSRN 76
Query: 300 LGFVLLRGENIVSLT 344
+G ++ RG ++ +T
Sbjct: 77 IGLIVARGTSVALIT 91
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 150 VRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR---EEKRTLGFVLLR 320
V V L+++R +G A+D+H NL++ D +E + KN R E R LG V +R
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKNKGRKKRQGCEFSRKLGKVFIR 94
Query: 321 GENIV 335
G+ ++
Sbjct: 95 GDTVI 99
>UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 152
Score = 43.6 bits (98), Expect = 0.006
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 293
+N +R+ +RT++G+ +FDKH+NL+L D EE R K + ++ +K
Sbjct: 5 INYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWIEMKNKSQK 56
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 43.2 bits (97), Expect = 0.008
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEF-RKIKSKNSKTADREEKRTL 302
L ++ + +RV L + IG K +D+ MNL+L D E+ +N+ + R L
Sbjct: 30 LAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKL 89
Query: 303 GFVLLRGENIVSLT 344
G ++RG +VSL+
Sbjct: 90 GLTVIRGTILVSLS 103
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 42.3 bits (95), Expect = 0.014
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ ++N V + R F+GT K FD+ +N+IL + E ++ S N+ E+ LG
Sbjct: 71 LESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHE--RVYSMNAGI----EQVVLG 124
Query: 306 FVLLRGENI 332
++RG+N+
Sbjct: 125 LHIIRGDNV 133
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 42.3 bits (95), Expect = 0.014
Identities = 27/62 (43%), Positives = 36/62 (58%)
Frame = +3
Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 335
V L+ R G + FD++ NLIL DC E R S+ +K A EE R G ++RGEN+V
Sbjct: 56 VLLRDGRMLFGVLRTFDQYANLILQDCVE-RIYFSEENKYA--EEDR--GIFMIRGENVV 110
Query: 336 SL 341
L
Sbjct: 111 ML 112
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 41.9 bits (94), Expect = 0.018
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ V V ++ R G AFD+H+N++LGD EE +I + + + KRT+
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYKTAKRTIPM 85
Query: 309 VLLRGENIV 335
+ +RG+ ++
Sbjct: 86 LFVRGDGVI 94
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 41.9 bits (94), Expect = 0.018
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE-FRKIKSKNSKTADREEKRTLGFVLL 317
N V + +++R +G KAFD+H N+IL D E + ++ K + R + + L
Sbjct: 90 NSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEVSGGGGKKKYMNKDRYISRLFL 149
Query: 318 RGENIV 335
RG+++V
Sbjct: 150 RGDSVV 155
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 41.5 bits (93), Expect = 0.024
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQQ + + Q + G + FD+ MNL++ D E R +KT D E++R LG
Sbjct: 25 LQQRTTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMA----TKT-DEEKRRPLG 79
Query: 306 FVLLRGENI 332
+LL+G+N+
Sbjct: 80 QILLKGDNV 88
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 41.1 bits (92), Expect = 0.032
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L + +N V + L+ ++T G FD+HMNL+L EE A+ E K LG
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEI---------PAEGEAK-GLG 59
Query: 306 FVLLRGENIVSLT 344
+++RG+N+V ++
Sbjct: 60 SIVVRGDNVVMIS 72
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 40.7 bits (91), Expect = 0.042
Identities = 27/74 (36%), Positives = 40/74 (54%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN V V L+ ++G + D MNL+L DC E+R+ T+D K G
Sbjct: 12 LKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCTEYRE------GTSDPVAK--YG 63
Query: 306 FVLLRGENIVSLTI 347
VL+RG NI+ ++I
Sbjct: 64 RVLIRGSNILFISI 77
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 40.7 bits (91), Expect = 0.042
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L ++++ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 306 FVLLRGENIV 335
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 40.3 bits (90), Expect = 0.056
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFK------AFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
L++++N + + + G +K A+DK MNL+L D EE+ N K +E
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEY-----INDKKDSQE 62
Query: 288 EKRTLGFVLLRGENIVSL 341
+R LG ++LRG I+ L
Sbjct: 63 IRRVLGLMVLRGSEIIYL 80
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 40.3 bits (90), Expect = 0.056
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L + ++ VRV L R GT K +D+ +NL+L + E + K +D E R LG
Sbjct: 10 LARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISD--ETRALG 67
Query: 306 FVLLRGENIV 335
++ RG +++
Sbjct: 68 LLVCRGTSVM 77
>UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA cap binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 135
Score = 39.9 bits (89), Expect = 0.074
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
+P + L ++ V V L+ R IG F+++D+ N +L C E K + AD
Sbjct: 5 IPFTTSGSLVDLVDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVERLHYKLEY---AD 61
Query: 282 REEKRTLGFVLLRGENIVSL 341
++ +G +L+RGEN+V+L
Sbjct: 62 KD----IGVLLVRGENVVAL 77
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 39.9 bits (89), Expect = 0.074
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ +N V + L+ +R GT +D +MN++L D +E NS+ R+ LG
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDE-------NSENVSRK----LG 56
Query: 306 FVLLRGENIVSL 341
V++RG N+V +
Sbjct: 57 TVVIRGSNVVRI 68
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 39.9 bits (89), Expect = 0.074
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L+ ++N V V R +GT K FD+ +NLIL + E R S E+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVV 56
Query: 300 LGFVLLRGENI 332
LG ++RG+N+
Sbjct: 57 LGLYIVRGDNV 67
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 39.5 bits (88), Expect = 0.097
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 165 QASRTFIGTFKAFDKHMNLILGDCEEFRKIKSK-NSKTADREEKRTLGFVLLRGENIV 335
+ R IG A+D H+N+IL + E K K N + ++ +R L V +RG++I+
Sbjct: 10 KGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKMERNLDMVFVRGDSII 67
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 39.5 bits (88), Expect = 0.097
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+Q + V V R F+G K FD+ NL+L +C E ++ ++ + E LG
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLE--RVYHPDAPVEELE----LG 58
Query: 306 FVLLRGENIV 335
LLRG+NIV
Sbjct: 59 IYLLRGDNIV 68
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 39.1 bits (87), Expect = 0.13
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ L+ V V L+ +T G +FD H+NL+L DC E D + + LG
Sbjct: 7 LRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEI-----------DEDSEVRLG 55
Query: 306 FVLLRGENIVSLT 344
VL+RG+++ ++
Sbjct: 56 RVLIRGDSVTLIS 68
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 38.7 bits (86), Expect = 0.17
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 335
+ L+++R G KA D+H N+IL E +K + A +R + + LRG+N++
Sbjct: 39 IALRSNRKLYGYIKAVDRHWNMILEHVIEITPTPAKPGQPAAAPIQRRINRLFLRGDNVI 98
Query: 336 SL 341
+
Sbjct: 99 CI 100
>UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 99
Score = 38.7 bits (86), Expect = 0.17
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 105 PLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEF 245
P G + LN +R+ L R ++GTF AFDK N +L +E+
Sbjct: 17 PTGAVKEVMDLLNTQLRLELNDERVYVGTFTAFDKFGNFVLTKADEY 63
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 38.7 bits (86), Expect = 0.17
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L Q ++ +RV R G K +D+ MNL++ D E + D R+LG
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVE---------EYEDGRPTRSLG 79
Query: 306 FVLLRGENIV 335
V+LRG NIV
Sbjct: 80 LVVLRGPNIV 89
>UniRef50_A7DRH4 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 80
Score = 38.7 bits (86), Expect = 0.17
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +3
Query: 150 VRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 329
V + L+ ++T GT K FD HMNL L +N++ E+ +G VLLRG+N
Sbjct: 20 VLLRLRNNKTVQGTLKDFDIHMNLTL-----------ENAEDVSEEKPNPIGKVLLRGDN 68
Query: 330 IVSLTI 347
I+++++
Sbjct: 69 ILAISL 74
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 38.7 bits (86), Expect = 0.17
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 135 HLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVL 314
+++ V V L++ G K +D+H+N+ILGD EE + R LG L
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEEIGETSI-----------RRLGLTL 64
Query: 315 LRGENIVSLT 344
+RG+++V +T
Sbjct: 65 VRGDSVVVIT 74
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 38.7 bits (86), Expect = 0.17
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ + V ++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 309 VLLRGENIV 335
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 38.3 bits (85), Expect = 0.23
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +3
Query: 117 NNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 296
N ++++ +R+ L +R+ G + FD+ +NL+L D S N T EK
Sbjct: 24 NRSTLRYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDD--------STNDTTT---EKT 72
Query: 297 TLGFVLLRGENIVSL 341
+G V++RG ++VS+
Sbjct: 73 PMGMVVVRGNSVVSM 87
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 38.3 bits (85), Expect = 0.23
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +3
Query: 105 PLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR 284
P+ N L++ L +++ + IG K D+ +N IL DC E N+KT
Sbjct: 10 PIKLLNPLEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKH 69
Query: 285 EEKRTLGFVLLRGENIVSL 341
G LLRG+NI L
Sbjct: 70 ------GLYLLRGDNIAVL 82
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 38.3 bits (85), Expect = 0.23
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +3
Query: 150 VRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 329
V+V +Q + G A+D+H N+ILGD E KN K + + + + +RG+
Sbjct: 19 VKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQ-IDMLFVRGDR 77
Query: 330 IVSL 341
IVS+
Sbjct: 78 IVSI 81
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 38.3 bits (85), Expect = 0.23
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGF 308
L+ V V L+ R G A+D+H+N++LGD EE I D+ K +
Sbjct: 18 LDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEM 77
Query: 309 VLLRGENIV 335
+ +RG++++
Sbjct: 78 LFVRGDSVI 86
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 37.9 bits (84), Expect = 0.30
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +3
Query: 150 VRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 329
V + L+ ++ IG +DKH+NL+L + E K +N + + + + V LRG+N
Sbjct: 17 VMIILRNNKRMIGKIINYDKHLNLLLENVNEI-KFVGENFSELIKIKSKFIPKVFLRGDN 75
Query: 330 IVSLTI 347
IV + I
Sbjct: 76 IVLILI 81
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 37.9 bits (84), Expect = 0.30
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 129 QQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGF 308
Q H +++ L A+R +GT + FD+ MNL++ N+ + +K +G
Sbjct: 27 QVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVI-----------DNTMEVNGNDKNDIGM 75
Query: 309 VLLRGENIVSL 341
V++RG ++V +
Sbjct: 76 VVIRGNSVVMI 86
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 37.9 bits (84), Expect = 0.30
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
++ +L + V SR F G K FD+ N+ILG+C E R K + EK +LG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYE-RIYK-------ESLEKISLG 57
Query: 306 FVLLRGENI 332
++RG+ +
Sbjct: 58 LYIIRGDTV 66
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 37.9 bits (84), Expect = 0.30
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE---EKRTLGFV 311
N + V + +R +G KAFD+H NL+L D E K+ K + + R + +
Sbjct: 32 NTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKGSAKYINKDRFISKL 91
Query: 312 LLRGENIV 335
+RG++++
Sbjct: 92 FVRGDSVI 99
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 37.9 bits (84), Expect = 0.30
Identities = 26/69 (37%), Positives = 37/69 (53%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ+ LN V V +F G +D+HMNL+L EE I N + RE KR +G
Sbjct: 8 LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEE---IPQDNQQ---REPKR-IG 60
Query: 306 FVLLRGENI 332
+++RG N+
Sbjct: 61 LMVMRGCNV 69
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 37.9 bits (84), Expect = 0.30
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L V + L+ R G A+D HMN+++ EE + + R E+RT
Sbjct: 20 LGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERRTAEM 79
Query: 309 VLLRGENIVSLT 344
+ +RG+ ++ L+
Sbjct: 80 LFVRGDGVILLS 91
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 37.5 bits (83), Expect = 0.39
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 111 GKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE 242
G L ++ +++ L A RT IGT FD MNL+L C+E
Sbjct: 13 GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKE 56
>UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep:
At4g18372 - Arabidopsis thaliana (Mouse-ear cress)
Length = 78
Score = 37.1 bits (82), Expect = 0.52
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
V ++ R F+G F DK N+IL D E+R I+ + E+R LG +L+
Sbjct: 3 VGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRCLGMILI 53
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 37.1 bits (82), Expect = 0.52
Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE---EKRTLGF 308
LN + + + F G + FDKH NL+L D E K ++ ++++ ++ +++ +
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIKEKFIPK 86
Query: 309 VLLRGENIVSLTI 347
+ RG+ ++ +TI
Sbjct: 87 LFFRGDAVILITI 99
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 37.1 bits (82), Expect = 0.52
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE-FRKIKSKNSKTADREEKRTL 302
++ ++ V + + R G A+D H+N+IL + E +++ +N + + ++ +R L
Sbjct: 14 IRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNAHETYKQSVVENDEESVKKIERNL 73
Query: 303 GFVLLRGENIV 335
V +RG++I+
Sbjct: 74 DMVFVRGDSII 84
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 37.1 bits (82), Expect = 0.52
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 36.7 bits (81), Expect = 0.69
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
++ V V R +GT + FD+ N+IL DC E ++ S S E+ LG ++
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAE--RVYSSESGV----EEAPLGVYMI 65
Query: 318 RGENI 332
RG+N+
Sbjct: 66 RGDNV 70
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 36.7 bits (81), Expect = 0.69
Identities = 26/74 (35%), Positives = 36/74 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ H+N V + Q R GT +FD +NL+L +E R++ S +R LG
Sbjct: 12 LQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVL---DEVRELPS----------QRILG 58
Query: 306 FVLLRGENIVSLTI 347
V+ RG I S I
Sbjct: 59 LVICRGALINSFAI 72
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 36.7 bits (81), Expect = 0.69
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
N LQQ + + Q G FD+ MN+++ + E + S + K D E+
Sbjct: 19 NFLQQQTPVTIWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEI-PVNSADGKE-DVEKGTP 76
Query: 300 LGFVLLRGENIVSLT 344
LG +LL+G+NI +T
Sbjct: 77 LGKILLKGDNITLIT 91
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 36.7 bits (81), Expect = 0.69
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +K+KN ++ LG
Sbjct: 25 LQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVH-MKTKN--------RKPLG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>UniRef50_A3FQF0 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 67
Score = 36.3 bits (80), Expect = 0.91
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 186 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 344
GT +FD++MN++L DCEE+ D +K TLG V +R N++ ++
Sbjct: 5 GTLVSFDEYMNILLNDCEEW----------IDNTKKGTLGKVFIRCNNVLYIS 47
>UniRef50_A6RWH0 Cluster: Predicted protein; n=10;
Pezizomycotina|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 98
Score = 36.3 bits (80), Expect = 0.91
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L ++N V + SRT +GT + D+ NL+L E R I+ A E G
Sbjct: 3 LSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVLSQTIE-RIIRPPEDIEASSEVPH--G 59
Query: 306 FVLLRGENIV 335
L+RG+N+V
Sbjct: 60 LYLIRGDNVV 69
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 36.3 bits (80), Expect = 0.91
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 117 NNXLQQHLNXXVRVXLQASRTFI-GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK 293
N +Q+ + +RV ++ + GT K+ D +MNL L D E + E+
Sbjct: 4 NKKVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVR----------GEKV 53
Query: 294 RTLGFVLLRGENIVSLT 344
R+LG V+LRG NI+ +T
Sbjct: 54 RSLGSVVLRGNNIILIT 70
>UniRef50_Q0UHH8 Cluster: Predicted protein; n=2;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 98
Score = 35.9 bits (79), Expect = 1.2
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L +LN V V RT IGT + D MNL+L + E R I+ + + E+ LG
Sbjct: 3 LNAYLNKRVTVLTLDGRTMIGTLFSCDGSMNLVLQEAVE-RIIRPREEEVP--SEEVPLG 59
Query: 306 FVLLRGENI 332
++RG+++
Sbjct: 60 LYIVRGDSV 68
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 35.9 bits (79), Expect = 1.2
Identities = 25/69 (36%), Positives = 32/69 (46%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L + V+V R +G+ K FD NLIL D F +I S + E LG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLG 56
Query: 306 FVLLRGENI 332
LLRGEN+
Sbjct: 57 VYLLRGENV 65
>UniRef50_Q6BIX4 Cluster: Similar to CA2640|IPF2930 Candida albicans
IPF2930 Suppressor of PAB1; n=3; Saccharomycetaceae|Rep:
Similar to CA2640|IPF2930 Candida albicans IPF2930
Suppressor of PAB1 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 91
Score = 35.5 bits (78), Expect = 1.6
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 162 LQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSL 341
L+ +R F GT + FD N+I+ +C E R I D ++ LG L+RG NIV +
Sbjct: 8 LENARLFEGTLQGFDNSTNVIINNCIE-RLIYPDEQ---DDNQEIPLGLYLMRGGNIVCI 63
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 35.5 bits (78), Expect = 1.6
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L ++ + ++ R G K FD+ MNL+L D EE + T R LG
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84
Query: 306 FVLLRGENIV 335
V++RG +V
Sbjct: 85 LVVVRGTTLV 94
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 35.5 bits (78), Expect = 1.6
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ +N V V ++ +IGT D MN++L +C+E+ + K R G
Sbjct: 15 LKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEY----GDDGKPIAR-----YG 65
Query: 306 FVLLRGENIVSLTI 347
VL+RG +IV ++I
Sbjct: 66 KVLIRGSHIVFISI 79
>UniRef50_Q54HH8 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 257
Score = 35.1 bits (77), Expect = 2.1
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +3
Query: 186 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE------KRTLGFVLLRGENIVSLTI 347
G AFDKHMN+IL D EE + T ++ + KR G + ++G+ +VS+ +
Sbjct: 196 GYIIAFDKHMNIILRDVEEEYDLLKSLPSTRNQNQPIQPKIKRYYGQLFIKGDTVVSVIL 255
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 35.1 bits (77), Expect = 2.1
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 99 KMPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 272
K P G H N + L+ +R +G KAFD+HMN+IL + E SK +K
Sbjct: 56 KGPFGLLTITMNH-NTQAFLELRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETK 112
>UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 101
Score = 35.1 bits (77), Expect = 2.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFR 248
L+ LN VR+ +R F+G FK D N+IL + E+R
Sbjct: 10 LESLLNRTVRLHTSDTRLFVGLFKCTDNDRNIILSNTYEYR 50
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 34.7 bits (76), Expect = 2.8
Identities = 20/72 (27%), Positives = 41/72 (56%)
Frame = +3
Query: 117 NNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 296
++ L+Q +N V V ++ ++G FD+ N++L +C E KI +K+ ++ E
Sbjct: 3 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCSE--KIYNKD---LNKVETV 57
Query: 297 TLGFVLLRGENI 332
++ ++LRG+ I
Sbjct: 58 SMESLVLRGDCI 69
>UniRef50_Q976F2 Cluster: 90aa long hypothetical small nuclear
ribonucleoprotein; n=2; Thermoprotei|Rep: 90aa long
hypothetical small nuclear ribonucleoprotein -
Sulfolobus tokodaii
Length = 90
Score = 34.7 bits (76), Expect = 2.8
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ N V V L+ ++G + D MNL+L DC E R+ TA+ K G
Sbjct: 17 LKTATNKIVLVKLKDGSEYVGRLEQSDGTMNLVLRDCIETRE------GTAEPVAK--YG 68
Query: 306 FVLLRGENIVSLTI 347
VL+RG NI+ +++
Sbjct: 69 RVLIRGSNILFISV 82
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 34.7 bits (76), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE 242
LQ + V V L+ S G ++FD+H+NL+L D EE
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEE 54
>UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 34.3 bits (75), Expect = 3.7
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
V + R F+G+F DK N+IL D E+R S + E+R LG +L+
Sbjct: 70 VGVSDGRFFLGSFHCMDKQGNIILQDTVEYR---STRRSSPSPMEQRCLGLILI 120
>UniRef50_Q4UC24 Cluster: U6 snRNA-associated Sm-like potein,
putative; n=1; Theileria annulata|Rep: U6
snRNA-associated Sm-like potein, putative - Theileria
annulata
Length = 113
Score = 34.3 bits (75), Expect = 3.7
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +3
Query: 174 RTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 347
R F+G K FD+ NL+L +C E ++ ++ + E LG LLRG+N+ + I
Sbjct: 28 RVFVGVLKGFDQLTNLVLYNCLE--RVYHPDAPVEELE----LGIYLLRGDNMYRIYI 79
>UniRef50_Q8SS46 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN F; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN F - Encephalitozoon cuniculi
Length = 81
Score = 34.3 bits (75), Expect = 3.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 99 KMPLGKN--NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE 242
K P +N LQ+ N VRV L+ + + GT A D + N++L +C E
Sbjct: 7 KKPARENPKQFLQRMKNRSVRVALKWGQVYEGTLVASDNYFNILLDECTE 56
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 34.3 bits (75), Expect = 3.7
Identities = 21/81 (25%), Positives = 39/81 (48%)
Frame = +3
Query: 99 KMPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 278
KM L++ L+ + V +Q R GT + FD +NL++ + E ++ N
Sbjct: 47 KMAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVW 106
Query: 279 DREEKRTLGFVLLRGENIVSL 341
++ G V++RG ++ SL
Sbjct: 107 QDGDR--CGTVVVRGNSVTSL 125
>UniRef50_A2Q9H8 Cluster: Contig An01c0290, complete genome; n=2;
Eurotiomycetidae|Rep: Contig An01c0290, complete genome
- Aspergillus niger
Length = 527
Score = 34.3 bits (75), Expect = 3.7
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 651 FLEDPVLAHHDPCQEELPSFLEE-GHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQD 475
FLE DP + L SFL E G W + E+ K+ DFLV +MA+ +W+D
Sbjct: 109 FLEQLRHRTADPVAKFLRSFLHEFGKRQWMV---HEQVKIISDFLVFITNKMAQCEVWRD 165
Query: 474 LEDPE 460
+ D E
Sbjct: 166 VSDSE 170
>UniRef50_Q7R4T3 Cluster: GLP_440_43387_42998; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_43387_42998 - Giardia lamblia
ATCC 50803
Length = 129
Score = 33.9 bits (74), Expect = 4.8
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +3
Query: 180 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLT 344
+ GT A D+HMN+++ C ++K E R+LG V+LRGE + T
Sbjct: 25 YTGTLLAIDRHMNMVISSC--CCRVK---------ESARSLGLVVLRGEEVAFFT 68
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 33.9 bits (74), Expect = 4.8
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE 242
L+ L V V LQ + + G +FD+HMNLIL + EE
Sbjct: 57 LKTSLEDRVSVLLQNNSSITGLLASFDEHMNLILINAEE 95
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 33.9 bits (74), Expect = 4.8
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 308
++ V V L+ R G A+D H NL+LGD EE + + + + R K+
Sbjct: 18 IDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVRTVKKQSEM 77
Query: 309 VLLRGENI 332
+ +RG +
Sbjct: 78 LFVRGREV 85
>UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 992
Score = 33.9 bits (74), Expect = 4.8
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 522 LVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEHFQARP*LPVRE 385
++P V++ A LLLWQ+ PE LRPG + E+ + L R+
Sbjct: 662 VMPQVLKAAGLLLWQEGRSPEALRPGTYVPLNAENLRVHTELQQRD 707
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 33.9 bits (74), Expect = 4.8
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 150 VRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGEN 329
V + L+ + I KAFD+H N++L + +E K K +RE R + + LRG++
Sbjct: 44 VIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEK-KGKNVINRE--RFISKLFLRGDS 100
Query: 330 IV 335
++
Sbjct: 101 VI 102
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 33.5 bits (73), Expect = 6.4
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 186 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 332
G FD++MNL+L D EE N K ++ +++LG +LL+G+NI
Sbjct: 32 GRIIGFDEYMNLVLDDAEEI------NVK---KDTRKSLGRILLKGDNI 71
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 33.5 bits (73), Expect = 6.4
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
L V V L++ R G KA+D+H+NL+ + E +N E K +L
Sbjct: 60 LRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEATE---TWEENGIEYTEERKN----FML 112
Query: 318 RGENIV 335
RG+N++
Sbjct: 113 RGDNVI 118
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 33.5 bits (73), Expect = 6.4
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +3
Query: 117 NNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKR 296
++ L ++ + V L+ R FIG + FD+ N++L D E D +
Sbjct: 2 SSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE-------RIYVGDCYSDK 54
Query: 297 TLGFVLLRGENIVSL 341
LG +RG+N+V L
Sbjct: 55 NLGLFFIRGDNVVIL 69
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 33.5 bits (73), Expect = 6.4
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L + L+ + V L+ R IG ++ D+ NLIL D E ++ +T G
Sbjct: 14 LFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------G 66
Query: 306 FVLLRGENI 332
F+L+RGEN+
Sbjct: 67 FMLIRGENV 75
>UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 128
Score = 33.5 bits (73), Expect = 6.4
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFR 248
L LN +RV +R F G FK D NLIL E+R
Sbjct: 10 LSSLLNKYLRVTTTDTRMFYGVFKCTDPDRNLILAHAHEYR 50
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 33.5 bits (73), Expect = 6.4
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE 242
L++HLN + V L+ ++G A D MNLIL D E
Sbjct: 16 LKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIE 54
>UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Homo sapiens (Human)
Length = 118
Score = 33.5 bits (73), Expect = 6.4
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 308
N V + + ++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 309 VLLRGENIV 335
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 33.1 bits (72), Expect = 8.5
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 186 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 332
GT FD+++NL+L D EE +K+ +R +G +LL+GENI
Sbjct: 41 GTLSGFDQYINLVLTDTEEV-YLKTNT--------RRKIGTILLKGENI 80
>UniRef50_Q0M0F8 Cluster: YhhN-like; n=1; Caulobacter sp. K31|Rep:
YhhN-like - Caulobacter sp. K31
Length = 210
Score = 33.1 bits (72), Expect = 8.5
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 603 LPSFLEEGHPSWGLLAFEEEQKVDHDF--LVPCVVEMARLLLWQDLEDPEVLRPGQCLY 433
L +FL GH ++GLL + E VD F P VV A ++LW+ L+P LY
Sbjct: 80 LAAFLA-GHVAYGLLFWRERGAVDGAFWATAPLVVLAAAVMLWRLWPSLGALKPAVALY 137
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 33.1 bits (72), Expect = 8.5
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 195 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 332
K FD++MNL+L + EE IK ++ +++LG +LL+G+NI
Sbjct: 97 KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133
>UniRef50_Q4N780 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 162
Score = 33.1 bits (72), Expect = 8.5
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ L + V L+ ++G FK+FD+ N+++ D +KI N ++ G
Sbjct: 17 LEDELGSLIWVTLRDDTFYVGLFKSFDQFGNIVITDA--VKKIILNNKRSF---SDIYCG 71
Query: 306 FVLLRGENI 332
+ ++RGE+I
Sbjct: 72 YTVIRGESI 80
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 33.1 bits (72), Expect = 8.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
++ V V L+ R F G ++FD+ NL+L D + K + K E + G ++
Sbjct: 24 IDRKVVVTLRGGRKFFGILRSFDQFANLVLQD--TYEKYFAVPEKVYGEEYR---GTYII 78
Query: 318 RGENI 332
RGEN+
Sbjct: 79 RGENV 83
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,512,202
Number of Sequences: 1657284
Number of extensions: 9769677
Number of successful extensions: 25933
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 25115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25882
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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