Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E01
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           96   3e-20
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     47   2e-05
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    39   0.005
06_03_1120 - 27765613-27765963                                         37   0.022
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852...    36   0.038
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    33   0.20 
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140...    33   0.27 
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...    31   1.1  
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...    30   1.9  
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    29   3.3  
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    29   4.4  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 45/80 (56%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
 Frame = +3

Query: 114 KNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSK-TADRE 287
           K + + Q +N  +RV +Q  R  +G F AFD+HMNL+LGDCEEFRK+  SK+SK T +RE
Sbjct: 5   KGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTTGERE 64

Query: 288 EKRTLGFVLLRGENIVSLTI 347
           E+RTLG +LLRGE +VS+T+
Sbjct: 65  ERRTLGLLLLRGEEVVSMTV 84


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
 Frame = +3

Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD---REEKRTLGF 308
           L+  + V L++ R   G   A+D+H+N+ILGD EE       + +T +   R  KRT+ F
Sbjct: 27  LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPF 86

Query: 309 VLLRGENIV 335
           + +RG+ ++
Sbjct: 87  LFVRGDGVI 95


>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/77 (24%), Positives = 43/77 (55%)
 Frame = +3

Query: 111 GKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREE 290
           G+   L+++++  +++ L A+R  +GT + FD+ MNL++            N+   +  +
Sbjct: 5   GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVV-----------DNTVEVNGND 53

Query: 291 KRTLGFVLLRGENIVSL 341
           K  +G V++RG ++V +
Sbjct: 54  KTDIGMVVVRGNSVVMI 70


>06_03_1120 - 27765613-27765963
          Length = 116

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFR---KIKSKNSKTADREEKR 296
           L++ L   + V +   R F+G F   DK  N++L D  E+R   + +S +S ++   E+R
Sbjct: 25  LRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSSPSSSPAEQR 84

Query: 297 TLGFVLL 317
            LG +L+
Sbjct: 85  GLGLILI 91


>07_03_1222 -
           24983294-24983356,24983695-24983858,24985209-24985231,
           24985340-24985374
          Length = 94

 Score = 35.9 bits (79), Expect = 0.038
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +3

Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 335
           V L A+R  IGT + FD+ MNL++            N+   +  EK  +G V++RG ++V
Sbjct: 34  VKLNANRVVIGTLRGFDQFMNLVV-----------DNTVEVNGNEKNDIGMVVIRGNSVV 82

Query: 336 SL 341
            +
Sbjct: 83  MI 84


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/49 (38%), Positives = 30/49 (61%)
 Frame = +3

Query: 186 GTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 332
           G    FD++MNL+L D EE       N K   ++ +++LG +LL+G+NI
Sbjct: 32  GRIIGFDEYMNLVLDDAEEI------NVK---KDTRKSLGRILLKGDNI 71


>02_01_0209 -
           1399613-1399622,1399719-1399764,1399849-1399927,
           1400004-1400162,1400988-1401050,1401154-1401222
          Length = 141

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/46 (39%), Positives = 30/46 (65%)
 Frame = +3

Query: 195 KAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 332
           K FD++MNL+L + EE   IK        ++ +++LG +LL+G+NI
Sbjct: 97  KGFDEYMNLVLDEAEEI-NIK--------KDTRKSLGRILLKGDNI 133


>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 308
           N  V +  + ++  +G  +AFD+H N++L +  E      K      K     + R +  
Sbjct: 31  NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 90

Query: 309 VLLRGENIV 335
           + LRG++++
Sbjct: 91  MFLRGDSVI 99


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 150 VRVXLQASRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGFVLL 317
           V +  Q ++  +G  +AFD H N++L +  E      K      K     + R +  + L
Sbjct: 384 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFL 443

Query: 318 RGENIV 335
           RG++++
Sbjct: 444 RGDSVI 449


>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 527 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 628
           SW+  C   +   P +   +++ND    WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +3

Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENI 332
           V ++  +  +GT   FD ++N++L D  E+         TA+      L  +LL G NI
Sbjct: 94  VIMKGDKELVGTLCGFDVYVNMVLEDVTEY-------EYTAEGRRITKLDQILLNGNNI 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,571,700
Number of Sequences: 37544
Number of extensions: 271533
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)