Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_E01
(807 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 124 3e-28
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 124 3e-28
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 124 3e-28
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 124 3e-28
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 124 3e-28
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 124 3e-28
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 124 3e-28
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 124 3e-28
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 124 3e-28
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 123 9e-28
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 121 3e-27
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 121 3e-27
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 121 3e-27
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 121 3e-27
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 121 3e-27
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 121 3e-27
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 121 3e-27
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 121 3e-27
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 121 3e-27
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 120 8e-27
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 119 1e-26
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 119 1e-26
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 118 3e-26
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 118 3e-26
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 104 3e-22
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 80 1e-14
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 80 1e-14
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 47 7e-05
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 47 7e-05
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 47 7e-05
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 47 7e-05
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 47 7e-05
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 41 0.006
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 41 0.006
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 41 0.006
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 40 0.011
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.011
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 40 0.011
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 40 0.011
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 40 0.011
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 39 0.024
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 39 0.024
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 39 0.024
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 39 0.024
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 39 0.024
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 37 0.075
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 37 0.075
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 37 0.075
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 37 0.075
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 37 0.075
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 37 0.075
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 37 0.075
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 0.92
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 33 0.92
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 33 0.92
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 33 0.92
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 33 0.92
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 32 2.1
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 32 2.1
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 32 2.1
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 32 2.1
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 32 2.1
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 32 2.1
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 32 2.1
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 32 2.1
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 32 2.1
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 6.5
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 6.5
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 30 8.6
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 30 8.6
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 30 8.6
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 30 8.6
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 124 bits (300), Expect = 3e-28
Identities = 69/152 (45%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 123 bits (296), Expect = 9e-28
Identities = 68/152 (44%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 121 bits (292), Expect = 3e-27
Identities = 67/152 (44%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 120 bits (288), Expect = 8e-27
Identities = 67/152 (44%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 282 REEKRTLGFVLLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 449
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 450 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 119 bits (287), Expect = 1e-26
Identities = 55/82 (67%), Positives = 67/82 (81%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTI 347
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 119 bits (287), Expect = 1e-26
Identities = 55/82 (67%), Positives = 67/82 (81%)
Frame = +3
Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
M +GK++ + QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 282 REEKRTLGFVLLRGENIVSLTI 347
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 118 bits (283), Expect = 3e-26
Identities = 66/142 (46%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Frame = +3
Query: 132 QHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 311
QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG V
Sbjct: 4 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 63
Query: 312 LLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 479
LLRGEN+VS+T+
Sbjct: 64 LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP 123
Query: 480 XRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 124 VRGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 118 bits (283), Expect = 3e-26
Identities = 66/142 (46%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Frame = +3
Query: 132 QHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 311
QH++ +R LQ R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR LG V
Sbjct: 4 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLV 63
Query: 312 LLRGENIVSLTIX----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 479
LLRGEN+VS+T+
Sbjct: 64 LLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP 123
Query: 480 XRGVGGPSQQHMAPGNRGQLSA 545
RGVGGPSQQ M P RG ++A
Sbjct: 124 VRGVGGPSQQVMTPQGRGTVAA 145
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 104 bits (250), Expect = 3e-22
Identities = 59/128 (46%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Frame = +3
Query: 174 RTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTIX- 350
R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 3 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEG 62
Query: 351 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHMAP 521
RGVGGPSQQ M P
Sbjct: 63 PPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTP 122
Query: 522 GNRGQLSA 545
RG ++A
Sbjct: 123 QGRGTVAA 130
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 79.8 bits (188), Expect = 1e-14
Identities = 37/66 (56%), Positives = 47/66 (71%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+GK++ + H + +R LQ R FIGTFKAFDKHMN+I DC+EFRK+K KN+K RE
Sbjct: 43 VGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPARE 102
Query: 288 EKRTLG 305
EKR G
Sbjct: 103 EKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 79.8 bits (188), Expect = 1e-14
Identities = 37/66 (56%), Positives = 47/66 (71%)
Frame = +3
Query: 108 LGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADRE 287
+GK++ + H + +R LQ R FIGTFKAFDKHMN+I DC+EFRK+K KN+K RE
Sbjct: 43 VGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPARE 102
Query: 288 EKRTLG 305
EKR G
Sbjct: 103 EKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.2 bits (107), Expect = 7e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +K +S +A E R LG
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLG 100
Query: 306 FVLLRGENIVSLTI 347
++ G +IVS+ +
Sbjct: 101 LAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.2 bits (107), Expect = 7e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +K +S +A E R LG
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLG 100
Query: 306 FVLLRGENIVSLTI 347
++ G +IVS+ +
Sbjct: 101 LAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 47.2 bits (107), Expect = 7e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +K +S +A E R LG
Sbjct: 93 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLG 148
Query: 306 FVLLRGENIVSLTI 347
++ G +IVS+ +
Sbjct: 149 LAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.2 bits (107), Expect = 7e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +K +S +A E R LG
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLG 100
Query: 306 FVLLRGENIVSLTI 347
++ G +IVS+ +
Sbjct: 101 LAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 47.2 bits (107), Expect = 7e-05
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L+ LN +R+ + RT +G F D+ N+ILG +EF +K +S +A E R LG
Sbjct: 45 LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVLG 100
Query: 306 FVLLRGENIVSLTI 347
++ G +IVS+ +
Sbjct: 101 LAMVPGHHIVSIEV 114
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 40.7 bits (91), Expect = 0.006
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L ++++ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 306 FVLLRGENIV 335
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 40.7 bits (91), Expect = 0.006
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L ++++ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 306 FVLLRGENIV 335
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 40.7 bits (91), Expect = 0.006
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L ++++ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 306 FVLLRGENIV 335
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L+ ++N V V R +GT K FD+ +NLIL + E R S E+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVV 56
Query: 300 LGFVLLRGENI 332
LG ++RG+N+
Sbjct: 57 LGLYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L+ ++N V V R +GT K FD+ +NLIL + E R S E+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVV 56
Query: 300 LGFVLLRGENI 332
LG ++RG+N+
Sbjct: 57 LGLYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L+ ++N V V R +GT K FD+ +NLIL + E R S E+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVV 56
Query: 300 LGFVLLRGENI 332
LG ++RG+N+
Sbjct: 57 LGLYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L+ ++N V V R +GT K FD+ +NLIL + E R S E+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVV 56
Query: 300 LGFVLLRGENI 332
LG ++RG+N+
Sbjct: 57 LGLYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.9 bits (89), Expect = 0.011
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 120 NXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRT 299
+ L+ ++N V V R +GT K FD+ +NLIL + E R S E+
Sbjct: 3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVV 56
Query: 300 LGFVLLRGENI 332
LG ++RG+N+
Sbjct: 57 LGLYIVRGDNV 67
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 38.7 bits (86), Expect = 0.024
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ + V ++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 309 VLLRGENIV 335
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 38.7 bits (86), Expect = 0.024
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ + V ++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 309 VLLRGENIV 335
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 38.7 bits (86), Expect = 0.024
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ + V ++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 309 VLLRGENIV 335
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 38.7 bits (86), Expect = 0.024
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ + V ++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 309 VLLRGENIV 335
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 38.7 bits (86), Expect = 0.024
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 308
L+ + V ++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 309 VLLRGENIV 335
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 64
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 65 RIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 37.1 bits (82), Expect = 0.075
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
LQ V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 306 FVLLRGENIVSL 341
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 0.92
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 521 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 625
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 308
N V + + ++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 309 VLLRGENIV 335
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 308
N V + + ++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 309 VLLRGENIV 335
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 308
N V + + ++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 309 VLLRGENIV 335
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.92
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 308
N V + + ++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 309 VLLRGENIV 335
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 32.3 bits (70), Expect = 2.1
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
L++ ++ + + L R G + FD MNL++ +C E A ++ +G
Sbjct: 9 LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIG 58
Query: 306 FVLLRGENIVSL 341
V++RG +I+ L
Sbjct: 59 MVVIRGNSIIML 70
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 509 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 658
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.7 bits (66), Expect = 6.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 509 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 658
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 30.3 bits (65), Expect = 8.6
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
++ + + L R G + FD MNL++ +C E A ++ +G V++
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNIGMVVI 50
Query: 318 RGENIVSL 341
RG +I+ L
Sbjct: 51 RGNSIIML 58
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 30.3 bits (65), Expect = 8.6
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
+ + + +++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 318 RGENIVSL 341
G NI L
Sbjct: 75 NGNNITML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 30.3 bits (65), Expect = 8.6
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
+ + + +++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 318 RGENIVSL 341
G NI L
Sbjct: 75 NGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 30.3 bits (65), Expect = 8.6
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 138 LNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 317
+ + + +++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 318 RGENIVSL 341
G NI L
Sbjct: 75 NGNNITML 82
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,810,589
Number of Sequences: 237096
Number of extensions: 1510504
Number of successful extensions: 3333
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 3183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3326
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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