Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E01
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...   107   1e-23
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    45   7e-05
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    40   0.002
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    36   0.045
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    33   0.18 
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    33   0.32 
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    32   0.42 
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    29   3.9  
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    29   3.9  

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/82 (58%), Positives = 61/82 (74%)
 Frame = +3

Query: 102 MPLGKNNXLQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 281
           M + KNN +  HLN  +++ LQ  RTFIG FKAFDKHMN++L +CEE R+IK K  K  D
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60

Query: 282 REEKRTLGFVLLRGENIVSLTI 347
            EEKR LG VL+RGE+IVS+T+
Sbjct: 61  GEEKRILGLVLVRGEHIVSMTV 82


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
           L + L+  +RV  Q  R   G  + FD+ +N++L DC E+ +     S   D  E R LG
Sbjct: 16  LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGD--ETRQLG 73

Query: 306 FVLLRGENI 332
            ++ RG  I
Sbjct: 74  LIVARGTAI 82


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKR 296
           L+  L+  V V ++  R   G  +AFD+H+N++L + EE    R++     +   ++ KR
Sbjct: 21  LRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKR 80

Query: 297 TLGFVLLRGENIV 335
            +  + +RG++++
Sbjct: 81  VVPMLFVRGDSVI 93


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
           L  ++N  V V     R  +G  K FD+ +NL++ D  E    +++   T        LG
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTT------PLG 58

Query: 306 FVLLRGENI 332
             ++RGEN+
Sbjct: 59  LYIIRGENV 67


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 305
           L + L+  + V L+  R  IG  ++ D+  NLIL D  E   ++    +T         G
Sbjct: 14  LFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ-------G 66

Query: 306 FVLLRGENI 332
           F+L+RGEN+
Sbjct: 67  FMLIRGENV 75


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 141 NXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEF----RKIKSKNSKTADREEKRTLGF 308
           N  V +  + ++  +G  KAFD+H N++L + +E      K      K     + R +  
Sbjct: 39  NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISK 98

Query: 309 VLLRGENIV 335
           + LRG++++
Sbjct: 99  MFLRGDSVI 107


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 156 VXLQASRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIV 335
           V ++  +  +GT   FD ++N++L D  E+         TAD +    L  +LL G +I 
Sbjct: 28  VIMKNDKEIVGTLTGFDDYVNMVLEDVVEY-------ENTADGKRMTKLDTILLNGNHIT 80

Query: 336 SL 341
            L
Sbjct: 81  ML 82


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 129 QQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEE 242
           Q+ +   VR  ++  R F G    FD+H NL++ D  E
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE 157


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRK 251
           L+++++  + + L  +R   G  + FD  MN+++ +  E++K
Sbjct: 9   LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +3

Query: 126 LQQHLNXXVRVXLQASRTFIGTFKAFDKHMNLILGDCEEFRK 251
           L+++++  + + L  +R   G  + FD  MN+++ +  E++K
Sbjct: 9   LKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,528
Number of Sequences: 27780
Number of extensions: 248925
Number of successful extensions: 678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)