Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D24
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    44   1e-05
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   2.7  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   8.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +2

Query: 116 QAVGVVEHPDRXGFTVVYKXAKATRKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRT 289
           +AVGV  +  R    +     K  +KPAK L R+   A A  R  YK +   +    YR 
Sbjct: 52  KAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRD 110

Query: 290 DLCKATLRRASAILRSQRP 346
           DL K ++ RASAIL SQRP
Sbjct: 111 DLVKVSVARASAILSSQRP 129


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 379 GCGCLSLFCFDGPLG 335
           GC C+ + C+DGP G
Sbjct: 481 GCKCIEIDCWDGPNG 495


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 34  NLKKPFSKXPNNVPHLHSFRSNG 102
           NLKK ++    N+ + HS+  NG
Sbjct: 323 NLKKQWASISPNITYKHSYNPNG 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,009
Number of Sequences: 5004
Number of extensions: 25816
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)