Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D24
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     33   0.093
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     32   0.22 
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     32   0.22 
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    29   2.6  
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    27   8.1  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 34  NLKKPFSKXPNNVPHLHSFRSNGLXHKSS 120
           N K  FSK PNN+ ++HS++ +GL +K +
Sbjct: 28  NAKVQFSKEPNNLYNVHSYKHSGLANKKT 56



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 191 KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 337
           KPA    +   +   R+    VK  +  N+YR DL K  L R SA+ RS
Sbjct: 81  KPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 34  NLKKPFSKXPNNVPHLHSFRSNGLXHKSS 120
           N K  F+K PNN+ ++HS++ +GL +K +
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKT 56



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 179 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 337
           K    PAK   +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 77  KKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 34  NLKKPFSKXPNNVPHLHSFRSNGLXHKSS 120
           N K  F+K PNN+ ++HS++ +GL +K +
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKT 56



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 179 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 337
           K    PAK   +   +   R+    VK  +  N+YR DL K  L R S++ RS
Sbjct: 77  KKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 297 ARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 392
           A  PF  +  +S+PR P   +  RQP P R++
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41


>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 344 ASGSGGWLKHDEG*PCIGLCGSG*P 270
           A GSGGW +  +G      CG+G P
Sbjct: 28  AEGSGGWRRRRDGHVARARCGAGEP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,260
Number of Sequences: 37544
Number of extensions: 216606
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)