Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D24
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.046
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   3.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.046
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 276  TTTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQPSRNN 392
            TT A  YAR+  +     ++ + P  Q++  Q QPSRNN
Sbjct: 1267 TTGAAVYARV--IAPTTITSSQSPGNQQQTIQTQPSRNN 1303


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 212 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 340
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 212 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 340
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 321  QPSSAPRGPSKQKRLRQPQPSR 386
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,632
Number of Sequences: 438
Number of extensions: 1816
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)