Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D22
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 59 8e-10
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 31 0.18
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 29 0.71
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.71
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 28 1.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.9
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 27 3.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.8
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 26 5.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.0
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 5.0
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 26 5.0
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.8
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 8.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.8
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 58.8 bits (136), Expect = 8e-10
Identities = 28/87 (32%), Positives = 46/87 (52%)
Frame = +1
Query: 340 RDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAAD 519
+D P++ ++ ++ F E R++++ PD F +L L W L + E++ Y + A
Sbjct: 11 KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70
Query: 520 QDKERYVKECAEYKRTNAYKEFTKQQS 600
QDKERY +E EY A E T + S
Sbjct: 71 QDKERYERERKEYDTKLANGEKTGKAS 97
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 367 LTGYVRFLNERRDQLRAQQPDLG 435
LTGY + N+RRD+L A+ P LG
Sbjct: 477 LTGYYIYENKRRDRLLAEDPSLG 499
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 76 WMY*SKTTMESDSLKSDVVNTVNSEVQPINIEKDPKPVTTDSSL 207
W+Y + T ES +K + +QPI+ E++P+ T S+
Sbjct: 61 WIYKNYVTKESKGIKYSGFQAYRTGIQPISFEQEPQLAGTVFSI 104
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Frame = +1
Query: 121 SDVVNTVNSEVQPINI------EKDPKPVTTDSSLTQVP 219
+D+ +T N E QP N KD KP+T LTQ+P
Sbjct: 248 NDIKHTPNKETQPSNQVDDSLKSKDSKPLTMSEVLTQLP 286
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 100 MESDSLKSDVVNTVNSEVQPINIEKDPKPVTTDS----SLTQVPIVSNVHVL-AETPVAI 264
+E L+ + V NSE + IEK+P TT S S T I SN+ +L +TP+ I
Sbjct: 59 LEKLKLRKNGVRKSNSEKPSVGIEKNPSFSTTKSAKSFSSTSSNIDSNLDLLNYDTPLTI 118
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 197 SVVTGFGSFSILIGCTSEFTVFTTSDFKESLSIVVLLQYIQHNTITILKH 48
S V G++ LI C ++F + K LS V +L+ ++H I LKH
Sbjct: 1338 SCVLTQGAYIDLISCITKFAKLNGNQ-KFCLSCVDMLKNLEHELIKHLKH 1386
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.9
Identities = 27/111 (24%), Positives = 50/111 (45%)
Frame = +1
Query: 358 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 537
++ L V+ L+ LR P G E ++A S+L E +QY + KE+
Sbjct: 1537 KEGLVQQVQNLSAELAALREHSPTQGSLENADEIARLRSQL--ESTKQYYE-----KEKE 1589
Query: 538 VKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSG*NGNTNL 690
+ A A KE TK++ + Q S++++++ + S N + N+
Sbjct: 1590 TEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNI 1640
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 451 RQLASEWSRLPAEEKQQYLDAADQDKERYVK----ECAEYKRTNAYKEFTKQQSDLQDGS 618
R+ EW + E+K ++ A ++DK + K + AE+K+ + +++ +D +
Sbjct: 115 RREMGEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKA 174
Query: 619 LSKKLRQ 639
KK R+
Sbjct: 175 EWKKARE 181
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 463 SEWSRLPAEEKQQYLDAADQDKERYVKECAEYKR-TNAYKEFTKQQSD 603
+EW + E+K ++ A ++DK + K E K N+ E+ K +
Sbjct: 152 AEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDE 199
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 463 SEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRTNAYKEFTKQQSDLQ 609
SE SRL + YLDA +Q + K + + T EFTK +DL+
Sbjct: 1280 SELSRLTVLSLENYLDAFNQ--VNFKKMELDNRLTTTDAEFTKVVADLE 1326
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Frame = +1
Query: 385 FLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQY----LDAADQDKE----RYV 540
F + ++ +L+A+ L L + L W+ L EEK+ Y L A ++ +E R
Sbjct: 205 FSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSA 264
Query: 541 KECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVD 654
+ A+ ++ A KE K + QD ++S K Q+ +++
Sbjct: 265 QNSAKLEKEKA-KEKQKDKDQEQD-TVSDK-NQIDEIE 299
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = +1
Query: 487 EEKQQYLDAADQDKERYVKECAEY----KRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVD 654
EE ++ D Q ERY +C E+ KR +E + + S L Q+ +
Sbjct: 599 EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTE 658
Query: 655 ASVSG*NGNTNLHRPISAT*QTERI 729
A V ++ + A ++E +
Sbjct: 659 AEVDSLRKENEENKQVIALKESELV 683
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 160 INIEKDPKPVTTDSSLTQVPIVSNV 234
+N E+DPKP +DSS + +SN+
Sbjct: 1 MNAEEDPKPADSDSSEECIICLSNL 25
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +1
Query: 340 RDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAAD 519
+ +T Q ++ +R L + + +R +L A + ++ E LP E+ ++ +D AD
Sbjct: 106 QSSTKIMQDVSSLIR-LPQLSETMRNLSMELTKAGVLEEMRDEMF-LPVEDDEELMDLAD 163
Query: 520 QDKE 531
+D+E
Sbjct: 164 EDEE 167
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 167 ILIGCTSEFTVFTTSDFKESLSIVVLLQYIQHNTITILKHFNIGFWFKLS 18
+LIG TSE+T + + +I+ + Y H+ LK F I WF S
Sbjct: 328 LLIGVTSEYTSVYSDKIPPTFTIIGIPDY--HSRKPSLKPF-ISRWFNCS 374
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 161 IGCTSEFTVFTTSDFKESLSIVVLLQYIQHNT 66
I C EFT TS + + L + VL Y NT
Sbjct: 1053 INCFLEFTSSKTSFYAKKLFLEVLNSYFMSNT 1084
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 130 VNTVNSEVQPINIEKDPKPVTTDSSL 207
VNTV + Q +N+++ +P +++SSL
Sbjct: 419 VNTVRTPRQLLNVKRPTEPASSNSSL 444
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 571 AYKEFTKQQSDLQDGSLSK 627
AY EF Q+ L+DG+LSK
Sbjct: 1143 AYDEFCDFQTSLKDGALSK 1161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,822
Number of Sequences: 5004
Number of extensions: 53514
Number of successful extensions: 201
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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