Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D19
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-5|CAB04193.2|  238|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF024492-1|AAF98622.2|  314|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z81515-5|CAB04193.2|  238|Caenorhabditis elegans Hypothetical
           protein F26H11.5 protein.
          Length = 238

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 186 NTGYETSNGIKAQETGQLKNIGTENEALE 272
           NTG     GI A+E+G+ +   TE++ L+
Sbjct: 58  NTGLRRMPGISAEESGETQTFETEDDILD 86


>AF024492-1|AAF98622.2|  314|Caenorhabditis elegans Hypothetical
           protein F14F9.5 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 183 YNTGYETSNGIKAQETGQLKNIG--TENEALEVRGEFAYIGPDGVTYAVTY 329
           Y+T Y TSNGI+   T  + N G   EN   ++      + PD V     Y
Sbjct: 17  YSTSYSTSNGIRLM-TFNIWNSGANVENGQQKIAKHILMVNPDVVALQEVY 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,301,735
Number of Sequences: 27780
Number of extensions: 156222
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)