Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D19
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    66   3e-13
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   3.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 65.7 bits (153), Expect = 3e-13
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +3

Query: 144 VISQANXNIGVEG-YNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTYA 320
           VI+     +  +G Y   +ETSNGI  QE+GQ K +  E   +  +G  +Y  PDG   +
Sbjct: 28  VITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVS 86

Query: 321 VTYVANEGGFQPSAPHIPKA 380
           +TYVA+E GFQ    HIP A
Sbjct: 87  ITYVADENGFQVQGSHIPTA 106


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 5   SQSFTCPQTTVFGQNKQSIKM 67
           S  FTC  T  FG +  SI M
Sbjct: 850 SALFTCVATNAFGSDDTSINM 870


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 10  IVHLSSNNSLRPKQTINQNAIV 75
           +V+ +SNN L   +T+ +NAIV
Sbjct: 81  VVYNASNNELVRTKTLVKNAIV 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,584
Number of Sequences: 438
Number of extensions: 2552
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)