Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D16
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    38   4e-04
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    24   5.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    23   9.0  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    23   9.0  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 72  NGLKKPRKPRHASTLGMDPKFLRNQRFCKXGNLKPAKQ 185
           NG+K+P+K R+ S    D KF RNQ+F   G ++  +Q
Sbjct: 19  NGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEAIRQ 56



 Score = 34.3 bits (75), Expect = 0.005
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 17  MAKSXHHPNHHQNRKAHSQWSQKAKEAQARIHPWHGSKIFKESKVLQXG*PEA 175
           MAKS +H NH+QN+KAH    ++ ++ +     +  +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 127 GSMPRVDACLGFLGFLRPLTVSFAVLVMIWMM 32
           G +  +D+  G L   RP +   AVL++ W M
Sbjct: 90  GELKIIDSSTGHLVEQRPASRDLAVLMITWAM 121


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  KSXHHPNHHQNRKAHSQWSQKAKE 94
           KS HH +HH  +   S  S K KE
Sbjct: 551 KSSHHKHHHHKKSKSS--SSKHKE 572


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 207 FSQPPSRVAWLASGY 163
           FSQPP R A   SGY
Sbjct: 138 FSQPPFRFALFFSGY 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 970,659
Number of Sequences: 5004
Number of extensions: 15159
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)