Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D16
(330 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_02_0115 - 11248021-11248101,11249017-11249118 50 3e-07
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 30 0.51
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 29 1.2
08_02_1506 - 27585894-27586467,27586923-27587551,27591026-27591391 28 2.0
06_03_0336 + 19671500-19672150,19672681-19673301 28 2.0
05_03_0661 - 16726958-16726966,16727133-16727234 28 2.0
05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107 27 2.7
01_05_0490 + 22672241-22674679 27 3.6
06_01_0292 + 2136637-2137050,2137162-2137671 26 6.2
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 26 6.2
08_02_0447 + 17233794-17233967,17234133-17234552 26 8.3
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 26 8.3
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 26 8.3
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 50.4 bits (115), Expect = 3e-07
Identities = 21/34 (61%), Positives = 26/34 (76%)
Frame = +3
Query: 72 NGLKKPRKPRHASTLGMDPKFLRNQRFCKXGNLK 173
NG+KKP++ R ST GMDPKFLRNQR+ + N K
Sbjct: 19 NGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 17 MAKSXHHPNHHQNRKAHSQWSQKAK 91
MAKS +H H+Q+ KAH +K K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPK 25
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 23 KSXHHP-NHHQNRKAHSQWSQKAKEAQARIHP-WHG 124
+S HH NHHQN H Q SQ Q H +HG
Sbjct: 633 QSYHHQQNHHQNYYGHRQMSQDQYHHQQNHHQNYHG 668
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 81 KKPRKPRHASTLGMDPKFLRNQ-RFCKXG 164
+KP KPR L + +F+R+Q + CK G
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482
>08_02_1506 - 27585894-27586467,27586923-27587551,27591026-27591391
Length = 522
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 62 AHSQWSQKAKEAQARIHPWHGS 127
A + W+++A EA ARI W G+
Sbjct: 492 ARTNWNKEASEAHARIQHWGGT 513
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 116 WHGSKIFKESKVLQXG*PEASQATREGG 199
WH FK S+ G PEA+ A EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 17 MAKSXHHPNHHQNRKAHSQWSQKAK 91
MAKS +H H+Q+ KAH +K K
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPK 25
>05_01_0404 - 3185603-3185920,3186877-3186993,3187087-3187107
Length = 151
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 14 KMAKSXHHPNHHQNRKAHSQWSQKAKEAQ 100
K + HHP+HHQ ++ Q Q+ ++ +
Sbjct: 68 KKQQQEHHPHHHQQQQQQYQRQQQQQQQE 96
>01_05_0490 + 22672241-22674679
Length = 812
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 11 IKMAKSXHHPNHHQNRKAHSQWSQKAKEAQA 103
IK K HH +HH + + +S + +A A
Sbjct: 558 IKSKKKHHHNHHHHHHLSDGHYSSPSSDASA 588
>06_01_0292 + 2136637-2137050,2137162-2137671
Length = 307
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 CKRIKMAKSXHHPNHHQ-NRKAHSQWSQKAKEAQA 103
C+R+ A + H PNH Q + K+++ S + A A
Sbjct: 230 CRRVATAGAPHQPNHQQCHPKSNTTISSSSTAAAA 264
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Frame = -1
Query: 162 PXCKT------FDSLKILDPCQGWM 106
P C+T F+S+K+L PC+ WM
Sbjct: 1448 PNCRTEKLYSYFESIKLLFPCEQWM 1472
>08_02_0447 + 17233794-17233967,17234133-17234552
Length = 197
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 87 PRKPRHASTLGMDP 128
PRKP AST G+DP
Sbjct: 3 PRKPAPASTTGLDP 16
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 CKRIKMAKSXHHPNHHQNRKAHSQWSQKAKEAQARIHPW-HGSKIFKE 142
CK +AK+ H +HH++ H + + K Q H HG KE
Sbjct: 749 CKESSVAKNACHDHHHEHNH-HEEPAHKHSSNQHGCHDHSHGHSNCKE 795
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 26 SXHHPNHHQNRKAHSQWSQKAKEAQ 100
S H HHQ + W QK +E Q
Sbjct: 755 SSPHQKHHQMSQEKHHWQQKHREEQ 779
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,523,461
Number of Sequences: 37544
Number of extensions: 105844
Number of successful extensions: 377
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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