Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D16
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.044
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.41 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.55 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   0.72 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   0.72 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   6.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 0.044
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 32  HHPNHHQNRKAHSQWSQKAKEAQARIHPWHGSKIFKESKVLQXG*PEASQAT 187
           HHPN   NRK H   S  +      +    GS+   +S +L    PEAS+AT
Sbjct: 401 HHPNCKINRKVHHTTSSSSAAGGEGLADRRGSE-SSDSVLLS---PEASKAT 448


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 32  HHPNHHQNRKAHSQWSQKAKEAQARIHPWHGSK 130
           +H NH+ N+  HS  S      Q      H SK
Sbjct: 423 NHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSK 455


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 109 DACLGFLGFLRPLTVSFAVLVMIW 38
           D+ L FLG ++ L++S  +L  IW
Sbjct: 95  DSRLSFLGPIKSLSLSIKMLERIW 118


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 0.72
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 38  PNHHQNRKAHSQWSQKAKEAQARIHPWHGSKIFKESKV 151
           PNH  ++    Q S K  E     + WH  KI    +V
Sbjct: 122 PNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRV 159


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 0.72
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 38  PNHHQNRKAHSQWSQKAKEAQARIHPWHGSKIFKESKV 151
           PNH  ++    Q S K  E     + WH  KI    +V
Sbjct: 122 PNHTSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRV 159


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 23  KSXHHPNHHQ---NRKAHSQWSQKAKEAQARIHPWHGSKIFKE 142
           +S HH +HHQ    +  +  +    +E + + HP    KI +E
Sbjct: 71  QSHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHP--NGKILRE 111


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 268 LCVYLLITNVHF 233
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 268 LCVYLLITNVHF 233
           +CV +++ NVHF
Sbjct: 322 ICVTVVVLNVHF 333


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 268 LCVYLLITNVHF 233
           +CV +++ NVHF
Sbjct: 318 ICVTVVVLNVHF 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 99  RHASTLGMDPKFL 137
           RH+STL +D K L
Sbjct: 241 RHSSTLDIDHKML 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,429
Number of Sequences: 438
Number of extensions: 1171
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)