Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D13
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 82 4e-17
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 45 8e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 41 1e-04
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 39 5e-04
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 36 0.003
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 33 0.026
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.078
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 31 0.10
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 31 0.14
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 29 0.42
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 28 0.73
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 2.2
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 27 2.2
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.9
SPBC23G7.17c |matmi_2|matmi, mat1|mating-type M-specific polypep... 25 5.1
SPBC1711.01c |matmi_1|matmi|mating-type m-specific polypeptide m... 25 5.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 9.0
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 9.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 9.0
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 9.0
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 82.2 bits (194), Expect = 4e-17
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = +2
Query: 221 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 400
+DKCIGS + +IMK+++E GTL GFDD+VN++L DVTEY+ T G K ++LLNGN
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGN 68
Query: 401 NIAMLVPGGE 430
+ ML+PGG+
Sbjct: 69 GMCMLIPGGK 78
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 44.8 bits (101), Expect = 8e-06
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 242 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT----KLDQILLNGNNIA 409
RI +++ G L+GFD +N++LDDV E PE K+T KL +++ G +
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94
Query: 410 MLVP 421
++ P
Sbjct: 95 LIAP 98
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 41.1 bits (92), Expect = 1e-04
Identities = 19/57 (33%), Positives = 36/57 (63%)
Frame = +2
Query: 245 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 415
I + + D + G ++GFD+F+N++LDD + ++ R +L +ILL G+NI ++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLKGDNITLI 81
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 38.7 bits (86), Expect = 5e-04
Identities = 16/63 (25%), Positives = 38/63 (60%)
Frame = +2
Query: 227 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 406
K + ++ + + +++ G L+G+D F+N++L+D E +G K+ K+ + + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
Query: 407 AML 415
M+
Sbjct: 68 IMI 70
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 236 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAML 415
G I + +KN + G L+ D+++N+ L +V + P+G K +L + + GNNI L
Sbjct: 12 GRPILVELKNGETFNGHLENCDNYMNLTLREVIR--TMPDGDKFFRLPECYIRGNNIKYL 69
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 281 GTLQGFDDFVNMLLDDVTEYESTPE---GRKITKLDQILLNGNNIAMLVPGGEMPGESYD 451
GT + D+F+ +L +T E TP+ KIT+ ++ L N A+++ GG G ++
Sbjct: 95 GTKKLIDEFIQEVLMCLTYLEETPDLSLDEKITEFSRLKLTTGNTALILSGGGTFGMTHI 154
Query: 452 G 454
G
Sbjct: 155 G 155
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.5 bits (68), Expect = 0.078
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 245 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 340
+++ K+ + VG L FD F+N++L D EY
Sbjct: 14 LNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 31.1 bits (67), Expect = 0.10
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 337
+ ++ +++++ K+++G L+ FD F N++L E
Sbjct: 20 VDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 30.7 bits (66), Expect = 0.14
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +2
Query: 245 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 337
+++ ++ D+E+ G L +D+ +NM+L D E
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Frame = +2
Query: 242 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK---ITK---LDQILL 391
++ I +N+K+++ ++ FD NM+L++V TE + T G+K I K + ++ L
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFL 101
Query: 392 NGNNIAMLV 418
G+ + ++V
Sbjct: 102 RGDGVVLVV 110
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 28.3 bits (60), Expect = 0.73
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST 349
I + + + +KND + G L+ D F+N+ L++++ +++
Sbjct: 11 IDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDAS 49
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 112 QVDCHYSK*IPRNLRTQKKNDAKFITES 195
Q +CHYSK + R+ KK + + ES
Sbjct: 35 QEECHYSKRLKRSYSATKKKNGNPVLES 62
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +2
Query: 227 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 406
K + I +KN + GT+ D +N L V + T +GR+ ++ + + GNNI
Sbjct: 9 KLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAV---KMTVKGREPVPVETLSIRGNNI 65
Query: 407 AMLVPGGEMP 436
+ +P
Sbjct: 66 RYYILPDSLP 75
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRK 364
IGSRI +I K+D VG LQ + + L + T EGRK
Sbjct: 5 IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGT-EGRK 47
>SPBC23G7.17c |matmi_2|matmi, mat1|mating-type M-specific
polypeptide Mi|Schizosaccharomyces pombe|chr 2|||Manual
Length = 42
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 74 VFKSSALCN*IIYKLIVITVNKFHEIFVRRKKMTQ 178
+F LC+ I KL I +N ++ ++RKK TQ
Sbjct: 6 LFTIQILCDQIELKLASIVINSNIKLQLKRKKKTQ 40
>SPBC1711.01c |matmi_1|matmi|mating-type m-specific polypeptide
mi|Schizosaccharomyces pombe|chr 2|||Manual
Length = 42
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 74 VFKSSALCN*IIYKLIVITVNKFHEIFVRRKKMTQ 178
+F LC+ I KL I +N ++ ++RKK TQ
Sbjct: 6 LFTIQILCDQIELKLASIVINSNIKLQLKRKKKTQ 40
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 452 HRMILQAFHHRAPTSLCYCH 393
HR+ L A++H+ S+C H
Sbjct: 1074 HRLTLTAYNHQTLLSICQIH 1093
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 518 FFFFFAGLNVVLFRKSSHKITIHRMILQAFHHRAPTSLCYCHL 390
FFF F ++ R S+ K+T + Q F+ +P S +L
Sbjct: 71 FFFMFPYFVMLKSRMSTQKVTKQSLGAQLFYDFSPKSFFLVYL 113
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 118 DCHYSK*IPRNLRTQKKNDAKF 183
DC+ SK IP+N ND+ +
Sbjct: 274 DCYSSKNIPKNTEALPNNDSSY 295
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQG--FDDFVNMLLDDVTEY 340
IG+ I + K+ + V L+ F N+L++DVTE+
Sbjct: 616 IGALIRSLSKSGPQTVSQLENALLPVFQNVLIEDVTEF 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,048
Number of Sequences: 5004
Number of extensions: 44985
Number of successful extensions: 101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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