Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D13
(519 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 120 8e-28
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 40 8e-04
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 40 8e-04
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 40 0.001
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 39 0.002
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 34 0.053
Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical pr... 34 0.070
U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear r... 33 0.093
AF125954-2|AAK68175.1| 193|Caenorhabditis elegans Hypothetical ... 32 0.21
Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z68120-4|CAA92202.1| 328|Caenorhabditis elegans Hypothetical pr... 27 6.1
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 8.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 8.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 8.0
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 27 8.0
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 27 8.0
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 27 8.0
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 27 8.0
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 27 8.0
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 120 bits (288), Expect = 8e-28
Identities = 52/72 (72%), Positives = 65/72 (90%)
Frame = +2
Query: 221 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGN 400
+DKCIGS+I +IMKNDKE+VGTL GFDD+VNM+L+DV EYE+T +G+++TKLD ILLNGN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 401 NIAMLVPGGEMP 436
+I MLVPGGE P
Sbjct: 78 HITMLVPGGEGP 89
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 40.3 bits (90), Expect = 8e-04
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +2
Query: 227 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 406
K + + + + ++ + G L+GFD F+NM++D+ EY+ +G + L ++ GN++
Sbjct: 11 KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67
Query: 407 AMLVP 421
++ P
Sbjct: 68 VIMEP 72
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 40.3 bits (90), Expect = 8e-04
Identities = 17/65 (26%), Positives = 38/65 (58%)
Frame = +2
Query: 227 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNI 406
K + + + + ++ + G L+GFD F+NM++D+ EY+ +G + L ++ GN++
Sbjct: 11 KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67
Query: 407 AMLVP 421
++ P
Sbjct: 68 VIMEP 72
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 355
+ R+++ M+ND+E+ G L+ FD +NM+L +V E +T E
Sbjct: 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 239 SRIHIIMKND--KEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 412
+R+ I + D + G + GFD+F+N++ D+ E +GR K+ +ILL G+NI +
Sbjct: 25 TRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGR--NKIGRILLKGDNITL 82
Query: 413 L 415
+
Sbjct: 83 I 83
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE-----GRKITKLDQILLNG 397
+ I + + +E G L+GFD +NM+LDD EY P+ G + +L I+ G
Sbjct: 20 LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVARG 79
Query: 398 NNIAMLVP 421
I ++ P
Sbjct: 80 TAITVVSP 87
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 34.3 bits (75), Expect = 0.053
Identities = 13/60 (21%), Positives = 34/60 (56%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAM 412
+ ++ +++++ ++++G L+ D F N++L+DV E + T +L+ G N+ +
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVEL 77
>Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical
protein T10G3.6 protein.
Length = 97
Score = 33.9 bits (74), Expect = 0.070
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 233 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 334
+G + + +KND + GTL D ++NM L D+T
Sbjct: 11 VGKDVVVELKNDLSICGTLHSVDQYLNMKLTDIT 44
>U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 3 protein.
Length = 126
Score = 33.5 bits (73), Expect = 0.093
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +2
Query: 245 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQILLNGNNIAMLV 418
++I +KN ++ GT+ G D +N L V+ T + ++ KLD + + GNNI ++
Sbjct: 15 VNIELKNGTQVSGTIMGVDVAMNTHLRAVS---MTVKNKEPVKLDTLSIRGNNIRYII 69
>AF125954-2|AAK68175.1| 193|Caenorhabditis elegans Hypothetical
protein C13B7.6 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.21
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 141 STKSSYAEKK*RKVHYRIQTRYCLWNLLTNALVPAFIS**KTTKKWLEL 287
S +S EK +KVH +I R C +L +LVP I K+ KK L+L
Sbjct: 125 SVTNSAPEKIQKKVHVKIMPRKCAPQILRRSLVPPPILTPKSAKKKLKL 173
>Z78012-3|CAB01413.1| 118|Caenorhabditis elegans Hypothetical
protein C52E4.3 protein.
Length = 118
Score = 31.9 bits (69), Expect = 0.28
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 11/70 (15%)
Frame = +2
Query: 242 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK-------LDQIL 388
++ I +N+K+++G ++ FD NM+L++V TE T +G+K K + ++
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMF 100
Query: 389 LNGNNIAMLV 418
L G+++ ++V
Sbjct: 101 LRGDSVILVV 110
>Z82260-1|CAB05140.1| 332|Caenorhabditis elegans Hypothetical
protein C32H11.2 protein.
Length = 332
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 17 CHFMTSILCVVIPKSKLKVVFKSSALCN*IIYKLIVITVNKFHEIFVRRKKMTQ 178
CH SI C ++ S + ++ + L ++Y I+++V KF + R+ M +
Sbjct: 178 CHENCSIYCDILKNSYVGLLIFQNILLLVLLYIPIMLSVRKFSHLPAARENMPE 231
>Z81104-9|CAB70252.3| 488|Caenorhabditis elegans Hypothetical
protein M199.2 protein.
Length = 488
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 335 EYESTPEGRKITKLDQILLNGNNIAMLVPGGEMPGESYD 451
EY STP K T + LL + M +P G E YD
Sbjct: 172 EYNSTPIAPKPTTSSKPLLQATKLGMWLPIGFAASELYD 210
>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
F20C5.2b protein.
Length = 1130
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 315 MFTKSSNPCRVPTISLSF--FIMI*MREPMHLSTSSRGSNVFGFGNELC 175
+ TKS + R I + F F++ LST RG+ V+G G +LC
Sbjct: 858 LMTKSLHAPRKFGIFMKFQKFLVDFQNYDRSLSTPQRGATVYGSGEQLC 906
>Z68120-4|CAA92202.1| 328|Caenorhabditis elegans Hypothetical
protein T24C2.4 protein.
Length = 328
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 284 TLQGFDDFVNMLLD-DVTEYESTPEGRKITKLDQI-LLNGNNIAMLV 418
TL GFDD+V ++LD EY EG + + + L+ I LV
Sbjct: 69 TLNGFDDYVKLVLDGKCLEYTDMYEGCLVKHKNTLKLIRDTTILQLV 115
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = +2
Query: 329 VTEYESTPEGRKITKLDQI----LLNGNNIAMLVPGGEMPGE 442
+ +YES P G+KIT ++++ L I +VP PG+
Sbjct: 681 ILQYESPPPGQKITTIEKVTESWTLEEAVITQVVPTAADPGD 722
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,169,155
Number of Sequences: 27780
Number of extensions: 253832
Number of successful extensions: 592
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -