Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D12
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 168 7e-43
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 91 2e-19
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 90 4e-19
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 77 3e-15
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 75 2e-14
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 68 2e-12
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 68 2e-12
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 63 4e-11
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 63 5e-11
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 62 7e-11
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 62 7e-11
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 62 9e-11
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 62 1e-10
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 60 3e-10
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 57 3e-09
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 55 1e-08
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 53 4e-08
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 52 7e-08
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 50 3e-07
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 43 4e-05
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 35 0.015
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.18
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.24
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 31 0.24
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 31 0.24
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.43
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.56
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 28 1.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 28 1.7
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.3
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 3.0
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 27 3.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.0
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 6.9
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 6.9
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 6.9
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 6.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.9
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 9.2
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 25 9.2
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 9.2
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 168 bits (409), Expect = 7e-43
Identities = 92/208 (44%), Positives = 120/208 (57%), Gaps = 2/208 (0%)
Frame = +1
Query: 157 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 336
M++ + L KAI LV A + D + Y +A + Y+ ++YF+ A+KYE + E++KE IR+K
Sbjct: 1 MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59
Query: 337 CLQYLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LQGKLEGAI 510
++YLDRA L+ L AI
Sbjct: 60 VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119
Query: 511 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLA 690
+VEKP+V+W D+AG V+LPIK P LF+ R PW GILL+GPPGTGKSYLA
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLA 179
Query: 691 KAVATEANNSTFFSVSSSDLVSKWLGES 774
KAVATEA STFFS+SSSDLVSKW+GES
Sbjct: 180 KAVATEA-GSTFFSISSSDLVSKWMGES 206
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 90.6 bits (215), Expect = 2e-19
Identities = 47/89 (52%), Positives = 58/89 (65%)
Frame = +1
Query: 508 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 687
I+ V WSD+AG VI P P LF G R P +G+LLFGPPGTGK+ L
Sbjct: 369 IISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREPVQGMLLFGPPGTGKTML 428
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGES 774
A+AVATEA +TFFS+S+S L SK+LG+S
Sbjct: 429 ARAVATEA-KATFFSISASSLTSKYLGDS 456
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 89.8 bits (213), Expect = 4e-19
Identities = 46/89 (51%), Positives = 57/89 (64%)
Frame = +1
Query: 508 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 687
IVV V W D++G V+ P P LF G R P +G+LLFGPPGTGK+ L
Sbjct: 449 IVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREPARGMLLFGPPGTGKTML 508
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGES 774
A+AVATE + S FFS+S+S L SK+LGES
Sbjct: 509 ARAVATE-SRSVFFSISASSLTSKFLGES 536
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 77.0 bits (181), Expect = 3e-15
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 687
VVE P+V+W D+ G V +P+ + F + P KG+L FGPPGTGK+ L
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGES 774
AKA+A E ++ F SV +L+S W GES
Sbjct: 548 AKAIANEC-SANFISVKGPELLSMWFGES 575
Score = 62.9 bits (146), Expect = 5e-11
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 529 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 705
V + D+ G V LP++ P LF I P +GIL++GPPGTGK+ +A+AVA
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280
Query: 706 EANNSTFFSVSSSDLVSKWLGES 774
E + FF ++ +++SK GES
Sbjct: 281 E-TGAFFFLINGPEIMSKMAGES 302
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 74.5 bits (175), Expect = 2e-14
Identities = 36/84 (42%), Positives = 51/84 (60%)
Frame = +1
Query: 523 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 702
P V W D+ G + LP++FP LF+ P G+LL+GPPGTGK+ LAKAVA
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA 709
Query: 703 TEANNSTFFSVSSSDLVSKWLGES 774
TE + F S+ +L++ ++GES
Sbjct: 710 TEL-SLEFVSIKGPELLNMYVGES 732
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 67.7 bits (158), Expect = 2e-12
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Frame = +1
Query: 511 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 687
V EKP V + DV G V LP+ P F I P KGI+L+GPPGTGK+
Sbjct: 170 VEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLC 229
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGE 771
A+AVA ++TF V S+LV K++GE
Sbjct: 230 ARAVANR-TDATFIRVIGSELVQKYVGE 256
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/94 (43%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Frame = +1
Query: 496 LEGAIVVEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPG 669
L ++VEK P + V G + LP+K P LF IP KGILL+GPPG
Sbjct: 130 LVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPG 189
Query: 670 TGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGE 771
TGK+ LA+AVA + F VS S+LV K++GE
Sbjct: 190 TGKTLLARAVA-HHTDCKFIRVSGSELVQKYIGE 222
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 63.3 bits (147), Expect = 4e-11
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 493 KLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPG 669
K EG V P V W+++ ++ PIK P L+ I G+LL+GPPG
Sbjct: 479 KREGFATV--PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPG 536
Query: 670 TGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES 774
GK+ LAKAVA E + + F S+ +L++K++GES
Sbjct: 537 CGKTLLAKAVANE-SKANFISIRGPELLNKYVGES 570
Score = 55.2 bits (127), Expect = 1e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 529 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 705
+ SD+ G V +PIK P ++ I P +G+LL GPPG GK+ LA A+A
Sbjct: 171 ISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALAN 230
Query: 706 EANNSTFFSVSSSDLVSKWLGES 774
E F S+S+ +VS GES
Sbjct: 231 EL-GVPFISISAPSIVSGMSGES 252
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 62.9 bits (146), Expect = 5e-11
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = +1
Query: 529 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT---GKRIPWKGILLFGPPGTGKSYLAKAV 699
V + D+ G V+ P+K+P +F G KG+LL+GPPG GK+ LAKA+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 700 ATEANNSTFFSVSSSDLVSKWLGES 774
A + + +TF +VS L KW GES
Sbjct: 146 AKQ-SQATFINVSVGLLTDKWFGES 169
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 62.5 bits (145), Expect = 7e-11
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +1
Query: 514 VEKP-HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 687
+E P + ++ V G + LP+K P LF I P KG+LL+GPPGTGK+ L
Sbjct: 123 IEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLL 182
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGES 774
A+AVA F V SS +V K++GES
Sbjct: 183 ARAVAASL-GVNFLKVVSSAIVDKYIGES 210
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 62.5 bits (145), Expect = 7e-11
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 523 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 699
P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ LAKAV
Sbjct: 186 PTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 245
Query: 700 ATEANNSTFFSVSSSDLVSKWLGE 771
A + ++TF V S+L+ K+LG+
Sbjct: 246 ANQ-TSATFLRVVGSELIQKYLGD 268
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 62.1 bits (144), Expect = 9e-11
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +1
Query: 511 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 687
++E P+V WSD+ G V P+ F+ + P KG+LL+GPPG K+
Sbjct: 539 MMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTIT 598
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGES 774
AKA+ATE F +V +L K++GES
Sbjct: 599 AKAIATE-TGLNFIAVKGPELFDKFVGES 626
Score = 60.5 bits (140), Expect = 3e-10
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 529 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 705
V +S + G V LP + P LF I P +G+LL+GPPGTGK+ + +AVA
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 706 EANNSTFFSVSSSDLVSKWLGES 774
EA N+ F++ +V K+LGE+
Sbjct: 336 EA-NAQVFTIDGPSVVGKYLGET 357
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 61.7 bits (143), Expect = 1e-10
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Frame = +1
Query: 511 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 687
V EKP ++SD+ G ++LP++ F + P KG L+FGPPGTGK+ L
Sbjct: 176 VDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLL 235
Query: 688 AKAVATEANNSTFFSVSSSDLVSKWLGE 771
A+A A + +N+TF +++ LV ++G+
Sbjct: 236 ARACAAQ-SNATFLKLAAPQLVQMFIGD 262
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 60.5 bits (140), Expect = 3e-10
Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 517 EKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 693
E+P V ++DV G V LP+ L+ I P +G+LL+GPPGTGK+ L K
Sbjct: 127 ERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVK 186
Query: 694 AVATEANNSTFFSVSSSDLVSKWLGE 771
AVA + + F V S+ V K+LGE
Sbjct: 187 AVA-NSTAANFIRVVGSEFVQKYLGE 211
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 56.8 bits (131), Expect = 3e-09
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +1
Query: 520 KPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKA 696
+ ++ ++ + G V+LP+ +P +F I P +G+L GPPGTGK+ +A+
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARV 425
Query: 697 VA----TEANNSTFFSVSSSDLVSKWLGES 774
+A T+ +FF SD +SKW+GE+
Sbjct: 426 LAANCSTKNQKISFFLRKGSDCLSKWVGEA 455
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +1
Query: 529 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA- 702
+ + V G V+LP+ +P +F + P +G+L GPPGTGK+ +A+A+A
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAA 322
Query: 703 ---TEANNSTFFSVSSSDLVSKWLGES 774
+E +F+ +D +SKW+GE+
Sbjct: 323 ACSSENKKVSFYMRKGADCLSKWVGEA 349
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 520 KPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPGTGKSYLAKA 696
K ++W D+AG + P+K+ ++ R+ GILLFG PG GK+YLA A
Sbjct: 600 KSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASA 659
Query: 697 VATEANNSTFFSVSSSDLVSKWLGES 774
+++ F S+ +L+ K++G+S
Sbjct: 660 ISS-TFPVQFISIKGPELLDKYIGKS 684
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 52.4 bits (120), Expect = 7e-08
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 529 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 702
+K++DVAG V +K P + G +IP +G +L GPPGTGK+ LAKA A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIP-RGAILSGPPGTGKTLLAKATA 350
Query: 703 TEANNSTFFSVSSSDLVSKWLG 768
EA N F SVS S+ + ++G
Sbjct: 351 GEA-NVPFLSVSGSEFLEMFVG 371
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 50.4 bits (115), Expect = 3e-07
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +1
Query: 526 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAV 699
+V++SDV G V ++ P FT G ++P +G+LL GPPGTGK+ LA+AV
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLP-RGVLLTGPPGTGKTMLARAV 320
Query: 700 ATEANNSTFFSVSSSDLVSKWLG 768
A EA N FF +S S ++G
Sbjct: 321 AGEA-NVPFFFMSGSQFDEMYVG 342
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +1
Query: 640 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGES 774
KGILL+GPPGTGK+ +A+ + N V+ ++++K++G+S
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGQS 349
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 628 RIPWKGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLVS 756
RI + IL+ GPP TGK+ +A +A + T F ++S+S++ S
Sbjct: 62 RIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVYS 105
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 613 LFTGKRIPWKGILLFGPPGTGKSYLAKAVATE 708
L K+ KG+L G GTGK+ LA A+A E
Sbjct: 56 LIKSKKFGGKGVLFAGGAGTGKTALALAIAQE 87
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 631 IPWK-GILLFGPPGTGKSYLAKAVATE 708
IP++ G LL+GPPG+GK+ A+A E
Sbjct: 239 IPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 640 KGILLFGPPGTGKSYLAKAVATEANNSTF-FSV 735
K + L GPPG GK+ + K++A+ N F FSV
Sbjct: 572 KIMCLVGPPGVGKTSVGKSIASALNREFFRFSV 604
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 640 KGILLFGPPGTGKSYLAKAVATEANNSTFFSVS 738
K +++FGP G GKS L K + + + FSVS
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDHGDKLGFSVS 51
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 637 WKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWL 765
+K +LL GPPG GK+ A VA + +++SD SK L
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLVA-KLEGYDVLELNASDTRSKRL 450
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 646 ILLFGPPGTGKSYLAKAVATEANNSTFFSVSS 741
+ + G G+GKS L AVA EA +F++SS
Sbjct: 382 VTVTGEKGSGKSNLLNAVADEARKFGYFAMSS 413
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = -1
Query: 764 SHLETRSDDXTEKNVELFASVATAFAKYDLPVPGGPNNKMPFHGILLPVNKCGNFIGKIT 585
S L+ SD+ + V AFA PN + F +L GNF+ + T
Sbjct: 415 SFLDNVSDELRGSTAQYITEVTNAFA---------PNKRWHFDTLLRVFKSAGNFVSEST 465
Query: 584 ASFNASLAASRP 549
S L AS P
Sbjct: 466 LSTFLRLIASAP 477
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 646 ILLFGPPGTGKSYLAKAVATEANNSTFFSVS 738
+ + GPPGTGKS L K++ + T ++
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRRYSKYTISQIT 107
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 649 LLFGPPGTGKSYLA-KAVATEANNS 720
++ GPPGTGKS++ KA+ T N+
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENT 414
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 634 PWKGILLFGPPGTGKSYLAKAVAT 705
P L GP GTGK+ L KA+A+
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALAS 636
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 646 ILLFGPPGTGKSYLAKAVA--TEANN 717
I++ G PGTGK+ LA+ VA TE N
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELEN 36
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +1
Query: 646 ILLFGPPGTGKSYLAKAVATEAN----NSTFFSV 735
I+L G P TGKSY+ ++ N N FFSV
Sbjct: 146 IILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSV 179
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 640 KGILLFGPPGTGKSYLAKAVATEANN 717
K ILL G PG GK+ L A+A E +
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGH 1585
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 427 FWIPRPLLVFSFDLF*DIPLIFQLYQDIEG-ILHEYFLLPFHL 302
+W + F F L IP++F L+ I G LH + + HL
Sbjct: 310 YWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 211 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 354
E+ N E+ L+ +Y F VK+ A + + S++ C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 634 PWKGI-LLFGPPGTGKSYLAKAVA 702
P+K + ++ GP G+GK+ +AKAV+
Sbjct: 12 PYKYVFVVIGPAGSGKTTMAKAVS 35
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 634 PWKGILLFGPPGTGKSYLAKAVA 702
P L GP G GK+ L KA+A
Sbjct: 531 PLASFLFLGPTGVGKTALTKALA 553
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 157 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 303
+TSS + KAI L TK+ + K N L + +E +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 202 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 327
K +E K+K+ ++ +LYE + + +YE E KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 658 GPPGTGKSYLAKAVATE 708
GP G+GKS LA A+ TE
Sbjct: 32 GPQGSGKSTLASALDTE 48
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 740 DXTEKNVELFASVATAFAKYDLPVPGGPNNKMP 642
D TE+N +LF VA F Y PN +P
Sbjct: 344 DFTEENRDLFEKVAEKFPFYINAYAKAPNGILP 376
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 619 TGKRIPWKGILLFGPPGTGKSYLAKAVA 702
+ R+P +L +GPPGTGK+ A A
Sbjct: 52 SSNRVPH--MLFYGPPGTGKTSTILACA 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,456
Number of Sequences: 5004
Number of extensions: 45811
Number of successful extensions: 204
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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