Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D11
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 233 3e-62
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 122 4e-29
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 28 1.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 26 5.1
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.9
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 233 bits (569), Expect = 3e-62
Identities = 110/206 (53%), Positives = 137/206 (66%)
Frame = +3
Query: 141 SNIVXXARKIIEANXLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYESMLDTVLY 320
S I+ A +I+E N L D LPV+KVDII+SEWMGY L YESMLDTVL
Sbjct: 86 SEIIHKAVQIVEVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWMGYFLLYESMLDTVLV 145
Query: 321 ARDKWLKPDGMMFPDRCTLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVAISEPLVDV 500
ARD++L PDG++FPDR + + IED YK EKI +WDDVYGFD S I+K EPLVD
Sbjct: 146 ARDRYLAPDGLLFPDRAQIQLAAIEDADYKSEKIGFWDDVYGFDFSPIKKDVWKEPLVDT 205
Query: 501 VDAKQVVTNSSLLKEIDLYTVKKEDLNFESKFHLHVRRNDFIQALVTYFNVEFTKSHKRL 680
VD V TNS ++ ++DL TVKKEDL F S F + RNDF+ A + +F++EF+ HK +
Sbjct: 206 VDRIAVNTNSCVILDLDLKTVKKEDLAFSSPFEITATRNDFVHAFLAWFDIEFSACHKPI 265
Query: 681 GFSTAPDAPYTHWKXTVFYFDDFMTV 758
FST P + YTHWK TVFY +TV
Sbjct: 266 KFSTGPFSRYTHWKQTVFYTHKDLTV 291
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 122 bits (295), Expect = 4e-29
Identities = 70/206 (33%), Positives = 101/206 (49%), Gaps = 9/206 (4%)
Frame = +3
Query: 141 SNIVXXARKIIEANXLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYESMLDTVLY 320
S+I+ A N L D LPV KVDIIISEWMGY L +ESM+D+VL
Sbjct: 287 SDIIQMAISNAFENGLADQITFIRGKIEDISLPVGKVDIIISEWMGYALTFESMIDSVLV 346
Query: 321 ARDKWLKPDGMMFPDRCTLFICGIEDRQYKDEKINWWDDVYGFDMSSIRKVAISEPLVDV 500
ARD++L P G+M P L + + + +E I++W DVYGF M+ ++ + V V
Sbjct: 347 ARDRFLAPSGIMAPSETRLVLTATTNTELLEEPIDFWSDVYGFKMNGMKDASYKGVSVQV 406
Query: 501 VDAKQVVTNSSLLKEIDLYTVKKEDLNFESKFHLHVRRNDFIQALVTYFNVEFTKSH--- 671
V V + +++T K +D++F S F L + + A +F+ FT
Sbjct: 407 VPQTYVNAKPVVFARFNMHTCKVQDVSFTSPFSLIIDNEGPLCAFTLWFDTYFTTKRTQP 466
Query: 672 ------KRLGFSTAPDAPYTHWKXTV 731
+ GF+T P THWK V
Sbjct: 467 IPEAIDEACGFTTGPQGTPTHWKQCV 492
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -1
Query: 535 KDEFVTTCLASTTSTRGSDIATFLIEDMSKPYTSSHQLIFSSLYCRSSIPHINNVHL 365
K + + ASTT + + + PYT S++L+ +S++ ++ P ++V L
Sbjct: 275 KSQASVSSTASTTGQTVKGVNADQTQQPTAPYTQSNELLETSVFVKNIPPETSDVSL 331
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 667 DFVNSTLKYVTKAWIKS--FLRTCKWNFDSKLRSSFLTVYKSISFNKDEFVTTCL 509
D ++ +KY T ++ + F+R + F S++ + LT+ ISF+ + V L
Sbjct: 2520 DLLHIFIKYTTSSFFLTDDFVRFIRVCFHSRISGNLLTLLHGISFDSTKAVAPVL 2574
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 397 SSIPHINNVHLSGNIIPSGLS 335
S++P++NNV GNI+ S LS
Sbjct: 228 SALPYVNNVPHLGNIVGSTLS 248
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 2 FLQKLPCPTISISFKVXPVLVSRLWHWAPVAV 97
+L LPC I + + +R WHW P V
Sbjct: 427 WLMILPCIINPIGLFMFGIGTARHWHWGPTYV 458
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 8.9
Identities = 25/97 (25%), Positives = 41/97 (42%)
Frame = -1
Query: 586 SKLRSSFLTVYKSISFNKDEFVTTCLASTTSTRGSDIATFLIEDMSKPYTSSHQLIFSSL 407
S + +S + S N +T+ A TST I + + + S P TSS L S+
Sbjct: 3399 SSVLNSSTPITSSTVVNSSTPITSSTALNTST---PITSSTVVNSSTPITSSSVLNSSTA 3455
Query: 406 YCRSSIPHINNVHLSGNIIPSGLSHLSLAYSTVSSIL 296
SSI + + S +++ S S T S ++
Sbjct: 3456 IASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVI 3492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,455
Number of Sequences: 5004
Number of extensions: 55192
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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