Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_D11
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 136 1e-32
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 136 1e-32
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 115 2e-27
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 90 2e-18
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 75 5e-14
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 30 1.7
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447 29 4.0
08_01_0296 + 2383578-2384220,2384754-2384829,2384942-2385057,238... 29 5.3
04_01_0306 + 4150560-4150919 28 7.0
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127... 28 7.0
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 28 9.3
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 28 9.3
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 136 bits (330), Expect = 1e-32
Identities = 71/185 (38%), Positives = 109/185 (58%), Gaps = 14/185 (7%)
Frame = +3
Query: 234 LPVDKVDIIISEWMGYCLFYESMLDTVLYARDKWLKPDGMMFPDRCTLFICGIEDRQYKD 413
+P +K D+++SEWMGYCL YESML +VLYARD +LKP G + PD T+F G
Sbjct: 372 VPSNKFDVLVSEWMGYCLLYESMLSSVLYARDHFLKPGGAILPDTATIFGAGFGK---GG 428
Query: 414 EKINWWDDVYGFDMSSIRKVAISE----PLVDVVDAKQVVTNSSLLKEIDLYTVKKEDLN 581
+ +W++VYGFDMS I K P+VD++ ++ +VT +++L DL T+K+ +++
Sbjct: 429 TSLPFWENVYGFDMSCIGKEVTGNSARFPVVDILASEDIVTETAVLNSFDLATMKENEMD 488
Query: 582 FESKFHLHVRRNDFIQALVT-------YFNVEFTK---SHKRLGFSTAPDAPYTHWKXTV 731
F S F L + + Q+ VT +F+ FT K + ST+P + THW T+
Sbjct: 489 FTSSFELRLSESGVSQSGVTWCYGIILWFDTGFTNRFCKEKPVNLSTSPFSTPTHWSQTI 548
Query: 732 FYFDD 746
F F++
Sbjct: 549 FTFEE 553
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 136 bits (330), Expect = 1e-32
Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Frame = +3
Query: 141 SNIVXXARKIIEANXLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYESMLDTVLY 320
S + AR+I++AN LDD + DKVD+IISEWMGY L YESML +VL+
Sbjct: 115 SEMATQAREIVKANNLDDKVVVVHGRVEDVEVE-DKVDVIISEWMGYMLLYESMLPSVLF 173
Query: 321 ARDKWLKPDGMMFPDRCTLFICGIEDRQYKDEKINWWDDVYGFDMSSI----RKVAISEP 488
ARDKWLKP G++ P TLF+ I + + + +++W DVYG +MS++ +K EP
Sbjct: 174 ARDKWLKPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYGINMSALVPLAKKFTSEEP 233
Query: 489 LVDVVDAKQVVTNSSLLKEIDLYTVKKEDL-NFESKFHLHVRRNDFIQALVTYFNVEFT- 662
++++ + V++ ++K ID YT K E+L +F +K+ + I +F VEF
Sbjct: 234 SIEIIGGENVLSWPFVVKHIDCYTFKAEELKSFTTKYKVSSMMLAPIHGFGLWFEVEFNG 293
Query: 663 ------------------KSHKRLG------FSTAPDAPYTHWKXTVFYFDD 746
+ +R G STAP+ THW T+ YF D
Sbjct: 294 PSNPTDKSPSDLNPLDVIRKKRRRGSEDPVVLSTAPEDEPTHWHQTILYFPD 345
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 115 bits (276), Expect(2) = 2e-27
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Frame = +3
Query: 243 DKVDIIISEWMGYCLFYESMLDTVLYARDKWLKPDGMMFPDRCTLFICGIEDRQYKDEKI 422
+KVD+IISEWMGY L YESML +V++ARDKWLKP G++ P +L++ I + + +
Sbjct: 156 EKVDVIISEWMGYMLLYESMLGSVIFARDKWLKPGGLILPSHASLYLAPITNSHRYQDSV 215
Query: 423 NWWDDVYGFDMSSI----RKVAISEPLVDVVDAKQVVTNSSLLKEIDLYTVKKEDL-NFE 587
+W DVYG MSS+ ++ A EP V+ + + V+T S++ ++D YT++ +L
Sbjct: 216 YFWQDVYGIKMSSMMPLAKQCAFMEPSVETISGENVLTWPSVVAQVDCYTIQAPELETIT 275
Query: 588 SKFHLHVRRNDFIQALVTYFNVEF 659
+ F+ + +F+VEF
Sbjct: 276 ATFNYTSMLQAPLHGFAFWFDVEF 299
Score = 25.8 bits (54), Expect(2) = 2e-27
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 663 KSHKRLGFSTAPDAPYTHWKXTVFY 737
K+ + STAP+ THW+ T+ Y
Sbjct: 330 KADAPIVLSTAPEDAPTHWQQTLLY 354
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 90.2 bits (214), Expect = 2e-18
Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 29/227 (12%)
Frame = +3
Query: 141 SNIVXXARKIIEANXLDDXXXXXXXXXXXXXLPVDKVDIIISEWMGYCLFYESMLDTVLY 320
+N+ AR++ AN + D LP +KVD+IISEWMGY L ESM D+V+
Sbjct: 99 TNMAEHARELARANDVADIVEVIQGSMEDVVLP-EKVDVIISEWMGYFLLRESMFDSVIC 157
Query: 321 ARDKWLKPDGMMFPDRCTLFICGIE----DRQYKDEKI---NW------WDDVYGFDMSS 461
ARD+WLKPDG+M+P +++ I + + +D +I +W + YG +M+
Sbjct: 158 ARDRWLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAMHDWNLFVEDTESYYGVNMNV 217
Query: 462 IRKVAISE--------PLVDVVDAKQVVTNSSLLKEIDLYTVKKEDL-NFESKFHLHVRR 614
+ K +E + + + QV+ ++++KEID T +++ ++ + ++
Sbjct: 218 LTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTATVDEIREVRAQVTMPIKL 277
Query: 615 N-DFIQALVTYFNVEFTKSH-----KRLGFSTAPDA-PYTHWKXTVF 734
+ + AL +F+V F S + + STAPD THW VF
Sbjct: 278 DMTRLAALAGWFDVHFRGSKQNPATQEVELSTAPDVNGGTHWGQQVF 324
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 75.4 bits (177), Expect = 5e-14
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 10/169 (5%)
Frame = +3
Query: 243 DKVDIIISEWMGYCLFYESMLDTVLYARDKWLKPDGMMFPDRCTLFICGIEDRQYKDEKI 422
+K DI+ISE MG L E ML++ + ARD++L P G MFP + + D E
Sbjct: 272 EKADILISEPMGTLLVNERMLESYVIARDRFLVPGGKMFPTTGRIHMAPFSDEYLYVEMA 331
Query: 423 N---WWD--DVYGFDMSSIRKVA----ISEPLVDVVDAKQVVTNSSLLKEIDLYTVKKED 575
N +W + +G D++ + A S+P+VD D + +V+ + +D T+K+E+
Sbjct: 332 NKALFWQQHNFFGVDLTPLHGSAFQGYFSQPVVDAFDPRLLVSPPT-FHTLDFTTMKEEE 390
Query: 576 L-NFESKFHLHVRRNDFIQALVTYFNVEFTKSHKRLGFSTAPDAPYTHW 719
L + + + L +F+V F S + +TAP +P THW
Sbjct: 391 LYEIDIPLNFVASVGTRVHGLACWFDVLFNGSTVQRWLTTAPGSPTTHW 439
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 243 DKVDIIISEWMGYCLFYESMLDT-VLYARDKWLKPDGMMFPDRCTLFI 383
+K DI++SE +G F ++ L L ++LKPDG+ P T FI
Sbjct: 391 EKADILVSELLGS--FGDNELSPECLDGAQRFLKPDGISIPSSYTSFI 436
>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
Length = 607
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/60 (26%), Positives = 23/60 (38%)
Frame = -1
Query: 604 CKWNFDSKLRSSFLTVYKSISFNKDEFVTTCLASTTSTRGSDIATFLIEDMSKPYTSSHQ 425
CK + D+ R FLT + S D V T T S +A L++ + Q
Sbjct: 533 CKGHIDNDFRMKFLTWFSLRSTENDRRVVTTFIKTLINEPSGLAEQLVDSFGEAINCKRQ 592
>08_01_0296 +
2383578-2384220,2384754-2384829,2384942-2385057,
2385957-2386522
Length = 466
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 643 YVTKAWI---KSFLRTCKWNFDSKLRSSFLTVYKSISFNKDEFVTTCLASTTSTRGSDI 476
Y AWI K+FL C W +D+ L + L Y + + + + T + ++ RG+ +
Sbjct: 277 YTGSAWIMLTKTFLEYCIWGWDN-LPRTLLMYYVNFISSPEGYFHTVICNSDEFRGTAV 334
>04_01_0306 + 4150560-4150919
Length = 119
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 43 QGQXSPRLSAVALGSCRC 96
Q Q PR S+V LG CRC
Sbjct: 90 QRQVHPRFSSVCLGQCRC 107
>01_07_0369 -
43111835-43111882,43112172-43112245,43112670-43112754,
43112930-43113022,43113099-43113163,43114051-43114142,
43114240-43114527,43114642-43114706,43115421-43115502,
43115578-43115669,43116169-43116301,43116380-43116501,
43116624-43116725,43116853-43116892,43117032-43117103,
43117241-43117320,43117444-43117818
Length = 635
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 136 ASAKTLXAPALAANSDRSPVPQPRDEDW 53
A T A + AAN D P PQP D+DW
Sbjct: 91 AERGTSLASSAAANDD--PQPQPDDDDW 116
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 237 PVDKVDIIISEWMGYCLFYESMLDTVLYARDKWL 338
PVDKV +S+ L +ES+ +T +AR KW+
Sbjct: 376 PVDKVSCYVSDDGASMLTFESLSETAEFAR-KWV 408
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 498 VVDAKQVVTNSSLLKEIDLYTVKKEDLNFESKFHLHVRRNDFIQALVTYFNVEFTKSH 671
V+D QVV ++ + + KE + K+ L VR + L+ V+F +SH
Sbjct: 360 VIDDAQVVQAFKVIDDAQVVQASKEIMTDRQKYELSVRLQSY-GGLIPNHVVDFIRSH 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,177,448
Number of Sequences: 37544
Number of extensions: 338652
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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