Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D10
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    82   7e-17
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    29   0.67 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   1.5  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   4.7  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   4.7  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    25   6.2  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 81.8 bits (193), Expect = 7e-17
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
 Frame = +1

Query: 16  VSVISSGAPLQSIQVPXKSGITSAVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFS 195
           VS+ + GA +Q+++   ++     +V GF++   Y  +  P+ G T+GR ANRI   +F 
Sbjct: 380 VSIANYGALVQAVRYKGRN-----LVNGFNDFSRYKLKENPFFGATIGRFANRIANGQFE 434

Query: 196 IDGTTYQLA-NNIGKDHLHGGINGFNKANWNSTV-----DGTKVIFSYLSKDGEEGYPGD 357
           +DG  Y L  N   K  LHGG NGF+K  +   +     D   + F  + KDG  G+P D
Sbjct: 435 VDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFPSD 494

Query: 358 LITNITYEVTDDNALYVDFMS-----XXXXXXXXXXXXHSYFNLA 477
           L T + Y +  +N+L +++ S                 HSY+NLA
Sbjct: 495 LETLVKYTI-KNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLA 538


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -2

Query: 323 R*LNITLVPSTVEFQFALLNPLIPPCK*SFPMLLAS**VVPSMLNFAPPILLAQRPTVVP 144
           R LNI+++PS V     L+N L  P    +  ++AS   VP +LN  P +  +Q   ++P
Sbjct: 362 RILNISVIPSDVHSPPKLINYLTSPDTVIWSAVIAS-CAVPGILNPIPLMTRSQSHRLIP 420


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 188 FAPPILLAQRPTVVPKYGVFLFTYPSS 108
           F PP+   Q P  +P + ++L ++PS+
Sbjct: 464 FVPPVRTNQIPRQIPSHSIWLSSFPSA 490


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 10  FSVSVISSGAPLQSIQVPXKSGITSAVVLGFDELDG 117
           +S+S   S  P  +I     SG TSA V+ FD ++G
Sbjct: 204 YSLSRSFSTDPTYNIIYDSGSGSTSATVISFDTVEG 239


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 155 TVVPKYGVFLFTYPSSSSKPRTTALVIPDLXGT*IDXSGAPDEMTDTEKPA 3
           T+V    +F  TYP+S ++  T  +VIP   GT  +   +  E+  +  PA
Sbjct: 343 TIVSGSEIFNTTYPASGTRTGTVEVVIP-TAGTVTETEISGSELYTSTFPA 392


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 91  VLGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNI 231
           ++ F E D Y N    +LG   GR       +KF     TY+L   I
Sbjct: 335 IINFPEDDPYYNEFDAFLGVVQGRYPPSRILSKFDDGAKTYELTKII 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,698
Number of Sequences: 5004
Number of extensions: 47118
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)