Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D06
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...   159   4e-40
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    43   4e-05
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    29   0.74 
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    27   3.9  
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   3.9  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    26   5.2  

>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score =  159 bits (386), Expect = 4e-40
 Identities = 77/109 (70%), Positives = 88/109 (80%)
 Frame = +3

Query: 12  KPRSEMTLEXLSKIEEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNM 191
           KPRSE++   L+++EE EFS GPLSVL Q+VKN+ QVLINCRNNKKLL RVKAFDRH NM
Sbjct: 7   KPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66

Query: 192 VLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLRGDSVILVLRNPLA 338
           VLENVKEMWTE  RT       A+NKD+FISKMFLRGD V+LV+R P A
Sbjct: 67  VLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVVRIPSA 115


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +3

Query: 120 VLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTXXXXXXXAVNKDKFISKMFLR 299
           V +  R +++L GR+ A+D H NMVL + +E+ T                 K    +F+R
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81

Query: 300 GDSVILV 320
           GDSVIL+
Sbjct: 82  GDSVILI 88


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +3

Query: 117 QVLINCRNNKKLLGRVKAFDRHCNMVLE 200
           +V++  R+ KKL+G +++FD+  N++L+
Sbjct: 23  KVIVVLRDGKKLIGILRSFDQFANLMLQ 50


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 15  PRSEMTLEXLSKIEEEEFST--GPLSVLTQSVKNNTQVL 125
           PRSE++ + L K+ +  +ST   P +   +S+KN   VL
Sbjct: 68  PRSEISADELKKLVDRSYSTFRHPETTPLKSLKNGLNVL 106


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 84  SVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 212
           S+L  S   + ++       +++ G +K FD+  N+VL++V+E
Sbjct: 24  SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 364 LLHYFPAAVARGFLSTKITESPRRNILEMNLSLFTALPFFPLP 236
           L  Y PA  A  F +  + +      L   + +F+ L F PLP
Sbjct: 434 LFIYLPAIFASLFFTESLFKRSEHLALRATIFIFSLLTFIPLP 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,784
Number of Sequences: 5004
Number of extensions: 62343
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)