Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D01
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    30   0.35 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.4  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    27   2.5  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.4  
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p...    26   5.8  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    26   5.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.6  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   7.6  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 344 EEILLINDVASVQPDTLEATSKKSEPSLTVVLPYTPRDGSSLQELYTRP-PRVEIVPASE 520
           +EI    D   V    L   + KSE  L  ++  +P+D +S + L T+  P  E + AS 
Sbjct: 349 DEIFACED--DVHYTALPKQNPKSERILEPIIA-SPKDNTSDKGLLTKSAPTFEELQAS- 404

Query: 521 VTPQPIKTS 547
           +TP+P+KTS
Sbjct: 405 ITPKPVKTS 413


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 311 EIYSVTQTLKNEEILLINDVASVQPDTLEATSKKSEPSLTVVLPYTPRDGSSLQELYTRP 490
           E+YS+T++ + +E+     +     D   ATSKKS  +    +PY+P   S+ +E+ + P
Sbjct: 350 ELYSITES-RCKELATSLKILQSTGDFSAATSKKSGLTKKTNIPYSP--NSNHEEINSIP 406

Query: 491 PRVE--IVPASE 520
            R +   VP S+
Sbjct: 407 LRNKNIFVPPSQ 418


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
 Frame = +2

Query: 116 DIEKTVKQVQNILQSHSELPRLTREEIIQ-LMNDIKAEDXXXXXXXXXXXXXNEIKITTP 292
           +I +    ++ IL+S +  P L R EI +   NDIK  D             ++ ++   
Sbjct: 413 EIIQPESDIRYILESAATGPFLPRVEIYEDYYNDIK--DQIFGVDVEFLSHRDKKRVPII 470

Query: 293 YSTSDNEIYSVTQTLKNEE----ILLINDVASVQPDTLEATSKKSEPSLTVVLPYTPRDG 460
            ST  + +  +  TL ++E    I L+N   S      EA +  S  +  V+  YTP   
Sbjct: 471 VSTILSYLDLLYPTLASDEVRQNIWLVNSPLSSVHQLREALNHSSSVTKEVLSQYTPSVV 530

Query: 461 SSLQELYTRPPRVEIVPAS 517
             + +LY       IVP+S
Sbjct: 531 IGVLKLYFLELPDSIVPSS 549


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 131 VKQVQNILQSHSELPR---LTREEIIQLMNDIKAE 226
           +  +QN L+S  E+     +T+E ++QL ND++ E
Sbjct: 845 INNLQNQLESTKEVANELTITKERVLQLTNDLQEE 879


>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 114 WI*RKQ*NKYKIFCSHILNSLDLPAKR 194
           W+  ++  K   FC H +  LD+P KR
Sbjct: 100 WLGEEKYQKLVNFCLHYIADLDIPVKR 126


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 181 KSREFRM*LQNILYLFHCFLYIHC*FSYRHH 89
           K R+F + +Q + +  HC + I   FSY HH
Sbjct: 195 KHRDFPI-VQCVFFTLHCAVLIMKQFSYSHH 224


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 389  CLAELKPHRLSVKFPHFLMSALLNIFH 309
            CL     H  S++  H + + LLNI+H
Sbjct: 3298 CLLSFSQHAASLRICHGIDAMLLNIYH 3324


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 92  MTVAESAVDIEKTVKQVQ-NILQSHSELPRLTREEIIQLMNDIKAED 229
           M+V   A  +E+T   ++ ++    S L  +TR   +   ND+K ED
Sbjct: 1   MSVQYDAFSVEQTCADLETDMYNGLSSLQEITRRNKVHGDNDLKVED 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,333
Number of Sequences: 5004
Number of extensions: 61803
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)