Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_D01
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 674 LEGFKPLPPAKIIDGNIDLPENILLTYDLISPAELK 781
           +E    +PP  I+ GNI LP+ +L+  D  S +EL+
Sbjct: 208 MEWITTVPPITILKGNITLPDYVLV--DFSSSSELR 241


>Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical
           protein R09E10.9 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 383 PDTLEATSK--KSEPSLTVVLPYTPRDGSSLQELYTRPPRVEIVPASEVTPQPIKTS 547
           P T+ + SK   + P  +++ P  P   S +Q +   PP V  +P+  V+P P+ T+
Sbjct: 349 PSTIPSPSKVVPNPPQKSLITPTVPP--SMIQTV--NPPTVSALPSPSVSPAPVPTT 401


>Z73424-4|CAA97778.2|  954|Caenorhabditis elegans Hypothetical
           protein C44B9.1 protein.
          Length = 954

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +2

Query: 665 LLPLEGFKPLPPAKIIDGNID---LPEN 739
           L PL G KP+P A  +DG I    LPEN
Sbjct: 870 LEPLCGIKPVPHASFVDGYIKAYYLPEN 897


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 398 ATSKKSEPSLTVVLPYTPRDGSSLQELYTRP-PRVEIVPASEVTPQPI 538
           A SK  EP  +      PRD S  + +  +P P+ E+ PA+   P+PI
Sbjct: 601 ADSKTKEPEKS-----KPRDPSPKKAVPAKPVPKTEVAPAAVKKPEPI 643


>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +2

Query: 299 TSDNEIYSVTQTLKNEEILLINDVASVQPDTLEATSK---KSEPSLTVVL--PYTPRDGS 463
           TSDN+     +  K+E  +L ND+   + +T  A  +   + +P +  +L   Y     S
Sbjct: 37  TSDNDTSYAKEDKKSENEVLDNDLLEAEMNTTIADVQAVLQVDPGVCRILLHKYKWNKES 96

Query: 464 SLQELYTRPPRVEIVPASEVTPQ 532
            L+ LY  P  +  +  ++V P+
Sbjct: 97  LLERLYEHPDTIAFLIDAQVIPR 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,267,122
Number of Sequences: 27780
Number of extensions: 344227
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)