Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C23
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 37 0.016
06_03_0020 + 15515768-15517696 33 0.19
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 32 0.34
05_07_0140 - 27982037-27983794 30 1.8
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 28 5.5
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419... 28 5.5
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 28 7.2
03_06_0137 - 31937541-31939892 28 7.2
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752... 27 9.6
05_04_0069 - 17639386-17641380 27 9.6
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +3
Query: 225 KNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKY 404
K++F+ C+Q+ FCKR R P L+LD+ ++ A ++ A+ + L
Sbjct: 31 KDEFRNCNQTPFCKRARTRAPHSLDAPLSLDA----ASLAVATDGSLTASLSHPSRLRPL 86
Query: 405 AFKLSALADGTFRVELDE 458
+LSAL R+++DE
Sbjct: 87 LLRLSALPPHALRLQIDE 104
>06_03_0020 + 15515768-15517696
Length = 642
Score = 33.1 bits (72), Expect = 0.19
Identities = 27/78 (34%), Positives = 38/78 (48%)
Frame = +3
Query: 333 GNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPLYPRYRTQLALDGEP 512
G E V D A E++ L KY + A+A GT E P+ R L + G+
Sbjct: 550 GYTPQTEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAM--EGKPI--RIMKNLRICGDC 605
Query: 513 KADGLKLISKDDGKVILV 566
A KL+SK +GKVI++
Sbjct: 606 HAFA-KLVSKSEGKVIII 622
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 276 PFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTF 440
P P + Y+LNL+SI+V+G L + ++ + T++ L+ LADG +
Sbjct: 267 PLVPSQPHYNLNLESIVVNGQKLPIDSSLFTTSNTQGTIV-DSGTTLAYLADGAY 320
>05_07_0140 - 27982037-27983794
Length = 585
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -2
Query: 535 ISFNPSAFGSPSNASCVLYLGYRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVT 356
++FNP +G P A LG G A+++S P + +D L T + A++
Sbjct: 8 VAFNPEGWGPPDTAPAPASLG--GGAAAASIPFAPFSRSDKLGRIADWTRNPAGPAALAA 65
Query: 355 TSADRTLP*TKI 320
S D T +
Sbjct: 66 ASRDSVFDFTSV 77
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/23 (39%), Positives = 20/23 (86%)
Frame = +3
Query: 534 ISKDDGKVILVNTQGHKVIITSE 602
+S DD +++L++++G KV++TS+
Sbjct: 351 MSIDDERIVLLDSRGEKVVVTSD 373
>05_01_0502 +
4191443-4191769,4191770-4191892,4194161-4194313,
4194420-4194505,4194648-4194732,4194871-4194990,
4195066-4195134,4195351-4195506
Length = 372
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 279 FKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDE 458
F P+ + L LD N+ A++V I ++V + Y A G+F + L
Sbjct: 77 FFPQFVNFLLLLDMFFFVSNLFMADLVGIHGLQVLKSVPFPYTITTFQFASGSFFITLMW 136
Query: 459 ADPLYPRYRTQL 494
L+P+ R L
Sbjct: 137 LLNLHPKPRLSL 148
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 311 IQTILRFFWFERAEPFTKAGLTACFKFIFVYRRN 210
IQTI F E A KA +CF F +RN
Sbjct: 323 IQTIFTHFMLENANHMRKAATRSCFYAGFAVQRN 356
>03_06_0137 - 31937541-31939892
Length = 783
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 400 NMPSSYQRWPMARSVWSSMKRILYTQDTGRSWRWMENR 513
N+ S+ RW A +W + K ++TG SW + ++
Sbjct: 622 NVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSK 659
>06_03_0037 +
15773444-15773647,15773862-15774367,15775011-15775246,
15775483-15775685,15775989-15776279,15776997-15777084,
15777539-15777861
Length = 616
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 352 RWLPLTLRMKSEQFCGNMPSSYQRWPMARSV 444
RW+P + E +CG++P+ WP A +
Sbjct: 303 RWVPAFFK---EDYCGSVPNVKTAWPFAEQL 330
>05_04_0069 - 17639386-17641380
Length = 664
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 276 PFKPEKSQYSLNLDSILVHGNVLSAEV 356
PF+P+ + L S VHGNV+ AEV
Sbjct: 456 PFEPDGCIWGSLLGSCRVHGNVVLAEV 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,800
Number of Sequences: 37544
Number of extensions: 391502
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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