Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C21
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    36   0.004
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    26   4.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   4.7  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.2  

>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +3

Query: 321 FHFLHTLALVTVPLCRRPYIAGAFFIAGMGMFCGTCY-YHAFTGDRKLRQV----TPLGG 485
           FH L T+A+   P+  +    G   I G  +F GT Y          LR++    TP+GG
Sbjct: 47  FHSLATMAVSLHPVYGKSRWTGPLLITGSCLFSGTIYGLCLLPKGHSLRRILGPLTPIGG 106

Query: 486 TCLILGWIAMV 518
             ++ GW  M+
Sbjct: 107 LVMLTGWATML 117


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 214 KWCCCCNPWCYGS 252
           ++C CCNPW  G+
Sbjct: 24  QFCLCCNPWYAGA 36


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
            reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 218  GAAAVILGAMGAHRTFPGD 274
            GA   +LG  GAH T PGD
Sbjct: 967  GAMLDLLGVRGAHMTSPGD 985


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 71  PEIRVNLVFDKFIH*SLS 18
           P IR N +FDKFIH ++S
Sbjct: 119 PCIRSNPIFDKFIHSTVS 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,231
Number of Sequences: 5004
Number of extensions: 51275
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)