Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C20
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.1  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   5.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.2  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 705  ALVNSKIIIAQVNVNMPRTFGDAIIHV 785
            +++N    IAQV +++PRT GD I+ V
Sbjct: 1228 SIINKIRKIAQVKIDVPRTPGDEIVVV 1254


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 559 ERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCI 446
           ERPSA   R    I  + D+     SG    A+FS+ +
Sbjct: 40  ERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 191 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 292
           LH GKLS  ++    D  Y  +  S   PL  +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,371
Number of Sequences: 5004
Number of extensions: 57087
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)