Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C20
(807 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 31 1.4
06_01_0080 + 644021-645463 30 2.5
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 29 3.3
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259... 29 3.3
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 29 4.4
06_03_0167 - 17412527-17413144,17413269-17414168 29 4.4
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862... 29 5.8
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 28 7.6
04_01_0042 + 473912-474058,474208-474349,474442-476264 28 7.6
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 28 7.6
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +2
Query: 182 VSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEK--CLKSGLTVFA 355
V +L+ K+ + V Y + + L +K E AF+K C + ++
Sbjct: 94 VDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCRYS 153
Query: 356 QGRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRK 460
R+A + S+ +W RH P +H+K
Sbjct: 154 HDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKK 188
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 396 MTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPI 575
+T +GK GS +K+VH E + E D+ +SV + +++ +E +
Sbjct: 173 VTYIGKGGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLS 232
Query: 576 FLQDI 590
FL +I
Sbjct: 233 FLIEI 237
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +3
Query: 390 NAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAI 569
+A+ E+ ++ + DI++ H + +P KD+ V M + V G+S +
Sbjct: 381 DAVIEIPRNDTEYDIEIDHGIFSWELETTSPTLKDVELKVKRGMKVAICGMVGSGKSSLL 440
Query: 570 PIFLQDIPKL 599
L ++PKL
Sbjct: 441 SSILGEMPKL 450
>03_06_0153 -
32024787-32024892,32024997-32025079,32025159-32025978,
32026122-32026327,32026887-32026975,32027132-32027192,
32027297-32027416
Length = 494
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 206 LSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGRGRHAGAS 385
L S LS+ ++ S F ++ +++ E S+ E+ EKCLKS V + + G
Sbjct: 297 LVSVELSISNECSLFQSSEGSVSSCNKRRENSST-ESVEKCLKSEPLVHSSRKKVLKGND 355
Query: 386 SQCHDRSRKKWI 421
S+ S +W+
Sbjct: 356 SEVEFPSLSQWL 367
>06_03_0947 +
26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 584 GHPQAIPQEDHPARHRSYPGVSPRQPWLLQP 676
G + ED+P R P P QPW + P
Sbjct: 486 GFKRPAATEDYPVRTNKIPRPIPEQPWYMNP 516
>06_03_0167 - 17412527-17413144,17413269-17414168
Length = 505
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 418 PLFPTSVMALRRGTGVAAAPLGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQRLCIRKVTS 239
PL + RRG G+ AP GEH + K LL R L + +R+ R V +
Sbjct: 105 PLSAVVKVCTRRGAGITFAPYGEHWRQVRKICRLELLSPRRI-LAFRAIREEEAARLVRA 163
Query: 238 I 236
I
Sbjct: 164 I 164
>05_07_0141 -
27985539-27985609,27985692-27985749,27986249-27986296,
27986455-27986517,27986599-27986722,27990021-27990358
Length = 233
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +2
Query: 521 GRERPQIXXXXXXXXXXXXPSGHPQAIPQEDHPARHRSYPGVSPRQPWLLQPGH 682
G+ RP++ PQE+ A + Y G+ PR+P L+ H
Sbjct: 124 GQVRPEVDGSDEKVEIANQNEKEVMPSPQEEEAAIKKKYGGIVPRKPALIAKDH 177
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 553 PSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTG 374
PS++ R+F+A T + +S + AA+ + C T + L P A RR +G
Sbjct: 97 PSSSSFRSFSAGTTTTTTSRDDNSSLMLAAAAASCHHQTTEVSSQILLPRPGQAARRSSG 156
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 281 DRKPEYSTAKEAFEKCLKSGLTVFAQGRGRHA 376
D K +Y+ EAF K LK G+ +Q RG+ A
Sbjct: 407 DNKEDYAKFYEAFSKNLKLGIHEDSQNRGKLA 438
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 293 EYSTAKEAFEKCLKSGLTVFAQGRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 469
E TAK E + +V + GR +H A++ HD+ R+ + H + R G G
Sbjct: 543 EVMTAKCVEENFISLLGSVTSYGRHQHTAATTTGHDKIRRLSVHGSHMPQGQQSRSGGG 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,433,439
Number of Sequences: 37544
Number of extensions: 449391
Number of successful extensions: 1388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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