Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C20
         (807 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...   151   6e-37
Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical pr...   101   5e-22
AL032632-12|CAA21589.3|  333|Caenorhabditis elegans Hypothetical...    83   2e-16
Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    29   5.2  
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    29   5.2  
Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein ...    28   9.0  

>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score =  151 bits (366), Expect = 6e-37
 Identities = 75/147 (51%), Positives = 96/147 (65%)
 Frame = +3

Query: 360 GAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRK 539
           G AATP PLL +++E   + +L  IK+ H+H E    +     +D  RS SLF   N+R 
Sbjct: 60  GIAATPTPLLQSLSEHAVANNLNKIKLHHLHLEGATPWTAEGVRDRIRSNSLFTGHNLRA 119

Query: 540 SVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLGTSVDCVRAALVNS 719
            V  G +D    FL ++P LF +  I+ + +LIQVSPPD  G+CSLGTSVD  RAA+ NS
Sbjct: 120 CVNNGIADFNSCFLYEVPLLFRKGAIKLNASLIQVSPPDAFGFCSLGTSVDTARAAVTNS 179

Query: 720 KIIIAQVNVNMPRTFGDAIIHVSHIDY 800
            +IIA VN NMPRTFGD +IHVSHIDY
Sbjct: 180 PLIIAMVNKNMPRTFGDGVIHVSHIDY 206


>Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK1320.9 protein.
          Length = 472

 Score =  101 bits (243), Expect = 5e-22
 Identities = 54/142 (38%), Positives = 78/142 (54%)
 Frame = +3

Query: 366 AATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSV 545
           A+ P  LL A+     S +L +I++ H+    +     P+     ++ SLF+    RK+V
Sbjct: 64  ASAPNVLLEALCRRVDSANLNNIRMSHLILSGNCPQFDPKYHGKIQNNSLFICPGNRKNV 123

Query: 546 AEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLGTSVDCVRAALVNSKI 725
             G +D  PIFL ++P L+    +  D ALI VSPPD  G+C+LG  +D   AA  ++K 
Sbjct: 124 NLGAADYTPIFLSEVPSLYTSGTLNVDFALITVSPPDELGFCTLGVDIDTTLAAATSAKK 183

Query: 726 IIAQVNVNMPRTFGDAIIHVSH 791
           IIA VN  MPRT G   +H SH
Sbjct: 184 IIALVNSTMPRTRGHTTVHSSH 205


>AL032632-12|CAA21589.3|  333|Caenorhabditis elegans Hypothetical
           protein Y11D7A.1 protein.
          Length = 333

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 40/94 (42%), Positives = 55/94 (58%)
 Frame = +3

Query: 510 SLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLGTSV 689
           SLF+    RK+V  G +D  PIFL ++P ++    +    ALI VSPPD  G+C+LG  +
Sbjct: 54  SLFICPGNRKNVKLGAADYTPIFLSEVPSVYTSGTLNVHFALITVSPPDELGFCTLGVDI 113

Query: 690 DCVRAALVNSKIIIAQVNVNMPRTFGDAIIHVSH 791
           D   AA  ++K IIA  N  MPR+ G   +H SH
Sbjct: 114 DTTLAAATSAKKIIALANSTMPRSRGHTTVHSSH 147


>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -3

Query: 571 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 392
           G   E+PSA   R         D+     SG    A+FSV I   +    DP     VMA
Sbjct: 46  GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104

Query: 391 LRR 383
             R
Sbjct: 105 PTR 107


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -3

Query: 571 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 392
           G   E+PSA   R         D+     SG    A+FSV I   +    DP     VMA
Sbjct: 46  GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104

Query: 391 LRR 383
             R
Sbjct: 105 PTR 107


>Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical
           protein B0272.3 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 354 PRGAAATPVPLLNAMTEVGKSG 419
           P   A TP PLLN++ + GK+G
Sbjct: 277 PEEVAFTPSPLLNSLVDSGKNG 298


>U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein 1
           protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 264 RCRSPWTGSLNIRPQRRRLRNVLNPD*PCSPRGAAATPVPLLNAMTEVG 410
           RCR+  + +++IR       +V +P    +P G  AT  PL++A  E+G
Sbjct: 418 RCRAVLSDNISIRSSIASTIDVQSPSTSFAPPGGVAT--PLVSAAAELG 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,190,630
Number of Sequences: 27780
Number of extensions: 345184
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)