Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C18
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 37 0.017
02_05_0955 - 33056171-33057256 34 0.093
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 33 0.28
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 33 0.28
09_04_0239 + 15954995-15956242 32 0.50
07_03_0503 + 18839863-18841209 32 0.50
09_04_0413 + 17372852-17373787 31 1.1
09_04_0240 + 15958110-15958305,15959586-15960763 30 1.5
09_04_0421 + 17417851-17418840 30 2.0
07_03_0659 + 20395422-20396765 30 2.0
01_01_0379 - 2956396-2957409 30 2.0
08_02_0997 + 23409932-23410894 29 2.6
09_04_0410 + 17362751-17363698 29 4.6
09_04_0409 + 17359459-17360622 28 6.1
06_01_0781 + 5846501-5847490 28 6.1
01_06_1701 - 39290537-39291077,39292110-39292801 28 6.1
04_04_0005 + 22095107-22095210,22095347-22095431,22095553-220956... 28 8.1
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 36.7 bits (81), Expect = 0.017
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +3
Query: 360 LNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAYG---GQHLTQKDTILVTAQYRLGSLG 530
L+++ PK R CPVV FV GG + G A+G G+ L ++ I+ YR G
Sbjct: 132 LDLYIPK--DINRPCPVVAFVTGGAWIIG-YKAWGSLLGRRLAERGIIVACIDYRNFPQG 188
Query: 531 YLSTDERDAAGNVGLFDLHAVMAXIQDYITFFGGDPTRXVVMGQ 662
+ DA+ + + + + I +GGDP R ++GQ
Sbjct: 189 TIGDMVSDASQGI---------SYVCNNIASYGGDPNRIYLVGQ 223
>02_05_0955 - 33056171-33057256
Length = 361
Score = 34.3 bits (75), Expect = 0.093
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 387 GDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 518
GD R P+V +VHGG + +GSASA Y + ++V+ YRL
Sbjct: 85 GDGRRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRL 133
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 375 PKMPGDERGCPVVFFVHGGNYKSGSASAYGGQH 473
P PG +G P V +GGN + G AYGG +
Sbjct: 319 PTYPGSNQGAPGVNPGYGGNNRQGPGPAYGGDN 351
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 32.7 bits (71), Expect = 0.28
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +3
Query: 381 MPGDERGC-PVVFFVHGGNYKSGSAS--AYGGQHLTQKDTILVTAQYRLGSLGYLSTDER 551
+P D G PVV FV GG + G A G+ L ++ ++ YR G +
Sbjct: 144 IPTDRTGLKPVVAFVTGGAWIIGYKGWGALLGRRLAERGILVACIDYRNFPQGTIGDMVE 203
Query: 552 DAAGNVGLFDLHAVMAXIQDYITFFGGDPTRXVVMGQ 662
DA+ + A + + I +GGDP R ++GQ
Sbjct: 204 DASQGI---------AFVCNNIASYGGDPERIYLVGQ 231
>09_04_0239 + 15954995-15956242
Length = 415
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 396 RGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 518
R P+V +VHGG + SGSASA Y + ++V+ YRL
Sbjct: 92 RRLPLVVYVHGGAFCSGSASAPPFHRYAESLAARAAAVVVSVDYRL 137
>07_03_0503 + 18839863-18841209
Length = 448
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 366 VFAPKMPGDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 518
+F P G+ R P+V + HGG + +GSA Y + ++V+ +YRL
Sbjct: 82 LFLPGGGGEGRRLPLVLYFHGGAFVTGSAFGRLFHRYAASLAARAGALVVSVEYRL 137
>09_04_0413 + 17372852-17373787
Length = 311
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Frame = +3
Query: 354 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 518
L + VF P P + PV+ F HGG + SA Y + V+ +YRL
Sbjct: 56 LSVRVFLPARPDPSKKLPVLVFFHGGAFVIESAFSTTYHGYAASLAAAAGVVAVSVEYRL 115
>09_04_0240 + 15958110-15958305,15959586-15960763
Length = 457
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +3
Query: 396 RGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 518
R P+V +VHGG + +GSASA Y + ++V+ YRL
Sbjct: 114 RRLPLVVYVHGGAFCTGSASARMFHDYAESLSARAAAVVVSVDYRL 159
>09_04_0421 + 17417851-17418840
Length = 329
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +3
Query: 348 DCLCLNVFAPKMP--GDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTA 506
D + ++ P P G R PV+ F HGG + GSA + + + I+V+
Sbjct: 59 DGVSARIYLPSTPASGYGRRLPVLVFFHGGGFCLGSAFDAATHGHANRLAARAGVIVVSV 118
Query: 507 QYRL 518
+YRL
Sbjct: 119 EYRL 122
>07_03_0659 + 20395422-20396765
Length = 447
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 387 GDERGCPVVFFVHGGNYKSGSA-----SAYGGQHLTQKDTILVTAQYRL 518
G R PV+ ++HGG++ + SA Y ++ ++V+ +YRL
Sbjct: 78 GSRRRLPVILYIHGGSFCTESAFCRTYHRYAASLASRAGALVVSVEYRL 126
>01_01_0379 - 2956396-2957409
Length = 337
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +3
Query: 354 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 518
L L V+ P GD PV+ HGG Y G+ Q+ ++++A YRL
Sbjct: 64 LKLRVYRPPTAGDAERLPVLVCFHGGGYCLGTFEKPSFHCCCQRLASELRAVVLSADYRL 123
Query: 519 G 521
G
Sbjct: 124 G 124
>08_02_0997 + 23409932-23410894
Length = 320
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 354 LCLNVFAPKMPGDERGC-PVVFFVHGGNYKSGSAS-----AYGGQHLTQKDTILVTAQYR 515
L ++ P + G ER PVV ++HGG GSA+ + + + ++V+ YR
Sbjct: 56 LWARLYLPDLDGGERKLLPVVVYLHGGGLVVGSAADALEHGFANRLCARARALVVSVDYR 115
Query: 516 L 518
L
Sbjct: 116 L 116
>09_04_0410 + 17362751-17363698
Length = 315
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +3
Query: 354 LCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 518
L + ++ PK+ + PV+ F HGG + SA + Y ++V+ YRL
Sbjct: 58 LSVRLYLPKIQEPSKKLPVLVFFHGGGFLIESADSSTYHNYVNPFAAAAGVVVVSVDYRL 117
>09_04_0409 + 17359459-17360622
Length = 387
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +3
Query: 360 LNVFAPKMPGDERGCPVVFFVHGGNYKSGSASA-----YGGQHLTQKDTILVTAQYRL 518
+ +F PK+ + PVV F HGG + SA + Y ++V+ YRL
Sbjct: 134 VRLFLPKLQEPSKKLPVVVFFHGGAFFIESAGSETYHNYVNSLAAAAGVLVVSVDYRL 191
>06_01_0781 + 5846501-5847490
Length = 329
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = +3
Query: 354 LCLNVFAPKMPGDERG-CPVVFFVHGGNYKSGSAS-----AYGGQHLTQKDTILVTAQYR 515
L +F P G +G PVV + HGG Y GSA+ +Y + + + V +YR
Sbjct: 63 LWARLFLPPGGGAPQGKLPVVVYYHGGAYVVGSAADPFTHSYLNGLVAEAGILAVALEYR 122
Query: 516 L 518
L
Sbjct: 123 L 123
>01_06_1701 - 39290537-39291077,39292110-39292801
Length = 410
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +3
Query: 396 RGCPVVFFVHGGNYKSGSASAYGGQHLTQK-----DTILVTAQYRL 518
R P+V HGG + SGS+S+ ++ D I+V YRL
Sbjct: 130 RRLPIVVQFHGGGFVSGSSSSAANDAFCRRVAKMCDAIVVAVGYRL 175
>04_04_0005 +
22095107-22095210,22095347-22095431,22095553-22095623,
22096613-22096727,22096884-22096963,22097302-22097386,
22098081-22098175,22098298-22098348,22098866-22098946,
22099659-22099731,22100057-22100134,22100224-22100256
Length = 316
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +3
Query: 405 PVVFFVHGGNYKSGSASAYGGQHLTQKDTILVTAQYRLGSLGYLSTDERDAAGNVGLFDL 584
PVVF +HGG Y SG + A + +K + V+ R G ++D+ D + D+
Sbjct: 75 PVVFCLHGGGY-SGLSFALAASRMKEKARV-VSMDLR-GHGKSTTSDDSDLSIETLSSDV 131
Query: 585 HAVMAXIQDYITFFGGDPTRXVVMG 659
AV+ T +G P +++G
Sbjct: 132 IAVLR------TLYGDSPPAIILVG 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,579,262
Number of Sequences: 37544
Number of extensions: 401829
Number of successful extensions: 954
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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