Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C16
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670           35   0.055
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947...    31   1.2  
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258...    29   2.7  
08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145     29   3.6  
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169           29   4.8  
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    29   4.8  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   4.8  

>06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670
          Length = 179

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +2

Query: 335 GEVGGPKGPEPTRY 376
           GE+GGP+GPEPTRY
Sbjct: 97  GEIGGPRGPEPTRY 110


>06_03_1162 +
           28093749-28093851,28093939-28093997,28094691-28094766,
           28094848-28094919,28095023-28095110,28095230-28095485,
           28095583-28095698,28096064-28096127,28096252-28096354,
           28096446-28096554,28097048-28097234
          Length = 410

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/112 (22%), Positives = 41/112 (36%)
 Frame = +2

Query: 77  LWNAIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVXKPESKRLSEFRKKLRETTSI 256
           +W+ + K   + +  +NA + + HY+  +  +E  N+         +S  R     T   
Sbjct: 26  IWDTLTKRPGRVIDFSNADVAVDHYHRYKEDVELMNDIGMDAYRFSISWSRIFPNGTGEP 85

Query: 257 TDLGEQTSNSKEDALXXXXXXXXXXXGEVGGPKGPEPTRYGDWERKGRVSDF 412
            + G    NS  DAL                P+  E  RYG W     + DF
Sbjct: 86  NEEGLSYYNSLIDALLDKGIEPYVTLFHWDLPQALE-DRYGGWLNSEIIEDF 136


>01_01_0321 -
           2584332-2584661,2584776-2584883,2584987-2585070,
           2585162-2585221,2585322-2585421,2585504-2585906,
           2586183-2586480,2587526-2587711
          Length = 522

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 240 EKLHQSLILVNKLQIPRKMLCLLGPTILTPTLVKLVV 350
           E++ +S      L++P + +CL GP  L+  L++L V
Sbjct: 166 EQIRRSSHSFENLKLPERKICLSGPNKLSEELIRLTV 202


>08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145
          Length = 140

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 176 KENESVXKPESKRLSEFRKKLRETTSITDLGEQTSNSKE 292
           KEN  V K E +R+ + +KKL +  +  D G   ++ KE
Sbjct: 45  KENVYVQKMERERMEKRKKKLEKEKAEADKGNPAASDKE 83


>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
          Length = 627

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 252 QSLILVNKLQIPRKMLCLLGPTILTPTLVKLVVPKGLNQPDMVIGKEKEEYLISKFKI 425
           Q L L+  + I    +C+    +  P L+ LV+P+G   PD  IG  K    +  F +
Sbjct: 399 QELKLLESIDIEWGSVCIPPDIVHLPHLIHLVIPEGTGLPD-GIGNLKSLITLRSFDL 455


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +2

Query: 86  AIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVXKPESKRLSEFRKKLRE 244
           A+++ R K L+LN  R       S  PP+ + ++SV + ES  ++E R  +RE
Sbjct: 156 AMKRSRPKVLRLNLVRSPPKESKSPLPPLPELSDSVGETESS-INEQRCPIRE 207


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 95  KLRNKALKLNNARICLSHYYSQQPPIEKENESVXKPESKRLSEFRKKLRETTSITDLGEQ 274
           K  +  LKL N R   S  Y  +   +K  E + +  +  LSE R+KL  + S+   G Q
Sbjct: 601 KCADLELKLLNFR---SQIYELEEKFQKSQEELEQ-RNLELSELRQKLDSSHSMAGEGVQ 656

Query: 275 TSNSK 289
           TS ++
Sbjct: 657 TSGAR 661


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,771,792
Number of Sequences: 37544
Number of extensions: 260152
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)