Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C14
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    29   1.8  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   4.3  
07_01_1104 - 10160493-10160599,10160632-10160637,10160930-101609...    28   4.3  
07_03_1626 + 28223967-28225294,28225506-28225779,28225939-282262...    27   9.8  

>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 175 TMKPWRLFINLFRMKLKNSCYARSLKPTPPKRKHRQN 285
           TMK W++FI  F +   + C+ + +K +     H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 170 AGHSAGDGSPLSTPAGCESELGFGHYEASQNKEXKREFG 54
           +G +A  G+ LS P   E+E G G      N+E  ++FG
Sbjct: 322 SGTTAVTGNELSKPVSDETETGTGDAGDKGNEENPKKFG 360


>07_01_1104 -
           10160493-10160599,10160632-10160637,10160930-10160975,
           10161053-10161190,10161275-10161679,10163193-10163330,
           10163401-10163482,10163596-10163943,10164294-10164655,
           10165154-10165209,10166428-10166558,10166564-10166628,
           10169191-10169631
          Length = 774

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 200 INRRQGFIVPAGHSAGDGSPLSTPAGCESELGFGHYEASQNKEXKREFGHFWL 42
           +N   G++ P  +SAGD     TP    ++   G   ASQ+     E G FWL
Sbjct: 167 LNLDYGYVYPMFYSAGDLLATGTPKVHVNQKNTGSVNASQDILNLDETG-FWL 218


>07_03_1626 +
           28223967-28225294,28225506-28225779,28225939-28226230,
           28226492-28226651,28226809-28226917,28227004-28227099
          Length = 752

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 148 PSPALCPAGTMKPWRLFINLFRMKLKNSCY----ARSLKPTPPKR 270
           P+ A+  A    P+RLF    R   K S      AR LKP+PP R
Sbjct: 3   PAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSPPPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,925
Number of Sequences: 37544
Number of extensions: 209763
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)