Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C13
(815 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 92 4e-19
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 58 8e-09
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 49 4e-06
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 47 2e-05
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 47 2e-05
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 45 8e-05
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 36 0.051
06_01_0414 + 2948868-2948998,2949136-2949202,2949442-2949531,295... 33 0.27
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 31 1.4
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 3.3
06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832... 28 7.7
01_01_0691 - 5328169-5328228,5328300-5328488,5328611-5328768,532... 28 7.7
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/68 (58%), Positives = 57/68 (83%)
Frame = +3
Query: 210 DHFNRMSKIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMY 389
DH+NR+++ +KRVVGVLLG ++G +DV+NS+AVPF+EDDKD +WFLDH+Y E+M+
Sbjct: 29 DHYNRVAR-DTRKRVVGVLLGT-SSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMF 86
Query: 390 GMFKKVNA 413
MFK++NA
Sbjct: 87 SMFKRINA 94
Score = 55.2 bits (127), Expect = 6e-08
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +3
Query: 672 HLLRDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIXDYLVQVGQGSLP 815
HLLRD+KDTT+ +L+ +T++L LKGL ++L EI YL V +G LP
Sbjct: 166 HLLRDVKDTTISTLATEVTSKLAALKGLDARLREIRGYLDLVIEGKLP 213
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 58.0 bits (134), Expect = 8e-09
Identities = 31/94 (32%), Positives = 48/94 (51%)
Frame = +3
Query: 246 KRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKV 425
+RV+G LLG G + V NS+ VP +E + LD +Y NMY KVN +E +
Sbjct: 41 ERVIGTLLGSVLPDGTVHVRNSYVVPHNESPDQVA---LDIEYHHNMYASHHKVNPKEVI 97
Query: 426 VGWYHTGPKLHQNDIAINELIRRYCPNSVLVIID 527
VGW+ TG + I++ R + + + +D
Sbjct: 98 VGWFSTGFGVSGGSTLIHDFYSREVQSPIHLTVD 131
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 672 HLLRDIKDTTVGSLSQRITNQLLGLKGLHSQLTEIXDYL 788
HLL D+KDTT+G+L+ +T++L LKGL ++L EI YL
Sbjct: 579 HLLMDVKDTTIGTLATEVTSKLAALKGLDARLREIRRYL 617
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 47.2 bits (107), Expect = 2e-05
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 231 KIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 410
+ G V+G++LG + + V + FA+P + SV +DH + NM M K+
Sbjct: 44 RAGVPMEVMGLMLGEFVDDYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTG 101
Query: 411 AREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 527
E VVGWYH+ P L DI + P +V V+ID
Sbjct: 102 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 47.2 bits (107), Expect = 2e-05
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 231 KIGNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 410
+ G V+G++LG + + V + FA+P + SV +DH + NM M K+
Sbjct: 44 RAGVPMEVMGLMLGEFVDDYTVRVVDVFAMP--QSGTGVSVEAVDHVFQTNMLDMLKQTG 101
Query: 411 AREKVVGWYHTGPK----LHQNDIAINELIRRYCPNSVLVIID 527
E VVGWYH+ P L DI + P +V V+ID
Sbjct: 102 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 44.8 bits (101), Expect = 8e-05
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +3
Query: 237 GNQKRVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAR 416
G RV G ++G R + V ++ NSF + D LD +LE ++KKV
Sbjct: 64 GQPPRVFGCVIGVQRGRTV-EIFNSFELVLDPVSGT-----LDRAFLEKKQELYKKVFPD 117
Query: 417 EKVVGWYHTGPKLHQNDIAINELIRRYCPNSVLVI----IDAKPKDLGLPTEAYQAVEEV 584
V+GWY TG + D+ I++ + + V ++ I+ KD LP Y++ E+
Sbjct: 118 FYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKD--LPVTIYES--EL 173
Query: 585 H-DDGTP 602
H DG+P
Sbjct: 174 HVIDGSP 180
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 35.5 bits (78), Expect = 0.051
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +3
Query: 252 VVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVVG 431
V G LLG VL+V+N F P EDD++ +Y M ++VN VG
Sbjct: 57 VTGQLLGL-DVGSVLEVTNCFPFPMREDDEEADAD--GANYQLEMMRCLREVNVDNNTVG 113
Query: 432 WYHT 443
WY +
Sbjct: 114 WYQS 117
>06_01_0414 +
2948868-2948998,2949136-2949202,2949442-2949531,
2950509-2950565,2950684-2950732,2950934-2951010,
2952776-2952815,2952909-2953003,2953174-2953341,
2953634-2953721,2954275-2954341,2954571-2954646,
2954759-2954876,2954988-2955233,2955296-2955471,
2956056-2956238,2956331-2956450,2956586-2956621
Length = 627
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 390 GMFKKVNAREKVV--GWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEA 563
G +K+ + ++V+ GW+HT N + + + PN L IID K L
Sbjct: 437 GYYKREDLTQEVMIDGWFHTDDDYMPNTMYNTGDVGEWQPNGSLKIIDRKKNIFKLSQGE 496
Query: 564 YQAVEEVHD 590
Y AVE + +
Sbjct: 497 YVAVENLEN 505
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +3
Query: 249 RVVGVLLGCWRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNAREKVV 428
R+ G ++G R G +DVS+ + + D LE ++KK V+
Sbjct: 69 RMSGCVIGVRRG-GTVDVSDILDILILHGPDPAT---FDRALLEKDQEIYKKAFPDLSVL 124
Query: 429 GWYHTGPKLHQNDIAIN 479
GWY G +H D+ I+
Sbjct: 125 GWYSIGTNVHATDMGIH 141
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 417 EKVVGWYHTGPKLH----QNDIAINELIRRYCPNSVLVIIDAKPKDLG-LPTEAYQAVEE 581
E VVGWY + P + +D ++ + P ++LV +D G A+++V
Sbjct: 163 EGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFRSVTS 222
Query: 582 VHD 590
H+
Sbjct: 223 YHE 225
>06_02_0066 -
11081446-11081544,11081639-11081846,11083122-11083257,
11083339-11083541,11083616-11083765,11083848-11083964,
11084623-11085119
Length = 469
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 382 TCMVCSKRLTPGKKLLAGTTLDLNFIR 462
TC++C + +T KKLL G ++ +R
Sbjct: 259 TCIICREEMTTAKKLLCGHLFHVHCLR 285
>01_01_0691 -
5328169-5328228,5328300-5328488,5328611-5328768,
5329677-5329767,5330359-5330438,5330472-5330533,
5330603-5330730,5331290-5331508,5331586-5331715,
5331804-5331870,5331968-5332062,5332150-5332221,
5332307-5332362,5332485-5332554,5332662-5332735,
5332820-5332954,5334135-5334314
Length = 621
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 367 WSRNQTDLSLSSSSNGTAKLFDTSKTPLALQQPNRTPTTRF*FPILLMRLKW 212
W RN SL+ S+NG++ + ++ TP A QQ + + FP + KW
Sbjct: 463 WERNYYITSLAGSNNGSSVVIMSTGTPYA-QQSYKVSDS---FPFKWINKKW 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,840,226
Number of Sequences: 37544
Number of extensions: 347070
Number of successful extensions: 814
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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