Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C13
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.63 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.63 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.63 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   4.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 336 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 470
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 336 DKDKSVWF-LDHDY-LENMYGMFKKVNAREKVVGWYHTGPKLHQNDI 470
           D   + W+ +  +Y +E+   M+K  N  +K + WY  G  L +N I
Sbjct: 50  DLSDAEWYDVGRNYDMESNMDMYKDKNVVQKFLWWYKQGMFLSRNAI 96


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 423 VVGWYHTGPKLHQNDIAINELIRRYCPNSVLVIIDAKPKDLGLPTEAYQAVEEVHDDGTP 602
           ++ W   GP+ H+    I ++  +Y P    +++  +PK   L     + + E+ +   P
Sbjct: 317 IINWNFRGPRTHRMPQLIRKIFLKYLPT---ILMMRRPKKTRL-----RWMMEIPNVTLP 368

Query: 603 TSRTFEHVPSEI 638
           TS T+   P+E+
Sbjct: 369 TS-TYSGSPTEL 379


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 348 SVWFLDHDY-LENMYGMF 398
           S W+L+HDY LEN    F
Sbjct: 206 SGWYLNHDYNLENKLNYF 223


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 630  LEHVQRSSKLVYHHRVLPLLL 568
            LEH     +L  HHR LP +L
Sbjct: 1088 LEHGAAGLRLCLHHRDLPCVL 1108


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 11  SIIICSSHFVSFHASSLCXLKSHSNKSRIXK 103
           S+I+ +S+FV+   S  C  K H  K  I +
Sbjct: 13  SVILITSYFVTPTMSIKCNCKRHVIKPHICR 43


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 592 MVHQLRGPLNMFQVKLVQRRLXKWEXS 672
           + H LRG  N++  KL+  R  K E S
Sbjct: 621 LYHVLRGNENIYSGKLISMRHLKEEVS 647


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/13 (69%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
 Frame = +3

Query: 348 SVWFLDHDY-LEN 383
           S W+L+HDY LEN
Sbjct: 206 SGWYLNHDYNLEN 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,260
Number of Sequences: 438
Number of extensions: 3689
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)