Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C10
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   4.7  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   4.7  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    25   6.2  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   6.2  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 257 TRPIAPLLRTSPKAESALTSS 319
           +RP+ PLL+  P+   ALT S
Sbjct: 639 SRPVQPLLKQRPQLHRALTES 659


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 351 F*SALALHAKIDEVKADSALGDVRRSGAIGLVEGQNALNGPPEDGRHMRQAEMEVF 184
           F SA  LH KI        +  ++RS   G  +G+  L+G P  GR +   + E+F
Sbjct: 165 FTSASLLHRKI----TTELVNVLQRSKDQGTKDGRFLLDGAPGSGRSIALIQAELF 216


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = +1

Query: 181 VENLHFSLPHVPSIFGRSIQG---ILAFDKTYSTA 276
           VENLH ++  + ++ G +++G   IL+FDKT+ TA
Sbjct: 126 VENLH-TMDEL-NMTGNALKGSRPILSFDKTFDTA 158


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 172 RKXVENLHFSLPHVPSIFGRSIQGILA 252
           ++ ++NL +SLP V SI   S+ GI++
Sbjct: 104 QEILQNLGYSLPIVGSISETSVSGIMS 130


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 232 SIQGILAFDKTYSTASANITQGGIGFNFVNLR 327
           SI+GI  +D     A  + T GGIG N  N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,069
Number of Sequences: 5004
Number of extensions: 30194
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)