Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C10
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771...    33   0.16 
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589...    29   1.5  
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637     29   2.7  
10_07_0115 - 13008835-13008877,13009117-13010621                       28   3.5  
02_01_0018 + 119890-120238,120331-120424,120518-121529                 28   3.5  
11_06_0416 + 23307984-23308281,23310083-23310900                       28   4.7  
02_01_0490 + 3541056-3542276                                           27   6.2  
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    27   8.2  

>04_04_1580 -
           34576595-34576723,34576905-34576981,34577058-34577104,
           34577864-34577964,34578114-34578203,34578647-34578763,
           34578835-34578992,34579562-34579843,34580367-34580667
          Length = 433

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 97  HTFVGTSVNRPLVXHH-DVQYSSKMFRKXVENLHFSLPHVPSIF 225
           +T V TS   PL  HH  +Q S + F+  V + + + PH+PS F
Sbjct: 78  YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121


>06_03_1227 +
           28557855-28558323,28558426-28558586,28558850-28558929,
           28559015-28559150,28559239-28559388,28559717-28559899
          Length = 392

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -2

Query: 408 HICLLLKQ*LSKNVYIVMNF*SALALHAKIDEVKADSALG-DVRRSGAIGLVEGQNALN 235
           ++C LL   + +++Y+V +F    ++ A + + K   A+G  VRR+ A+G   G   L+
Sbjct: 126 NVCALLGCCVDRDLYLVFHFSGRGSVSANLHDEKKAPAMGWAVRRAIAVGTARGLEYLH 184


>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
          Length = 454

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 219 GRHMRQAEMEVFNXLTEHFRAVLHVMVXDQGPIDAGADESVTAF 88
           GRH   A++ VFN     +   L   + + GP DAG + S T +
Sbjct: 257 GRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTTTW 299


>10_07_0115 - 13008835-13008877,13009117-13010621
          Length = 515

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 69  RRCGARGMRSHFRRH 113
           RR GA GMR+H RRH
Sbjct: 387 RRYGAAGMRAHIRRH 401


>02_01_0018 + 119890-120238,120331-120424,120518-121529
          Length = 484

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 297 ALGDVR--RSGAIGLVEGQNALNGPPEDGRHMRQA 199
           ALGD+    S +I L+E Q+ L  PP + R MR+A
Sbjct: 255 ALGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKA 289


>11_06_0416 + 23307984-23308281,23310083-23310900
          Length = 371

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 240 LNGPPEDGRHMRQAEMEVFNXLTEHFRAVLHVMVXDQGP-IDAGADESVTAFHEH 79
           L GP    RH  +  + V +     F A+LH +  D  P +D   D  V A  +H
Sbjct: 230 LFGPMAMSRHNNEETIRVHDMEPRVFEAMLHFIYNDSLPEVDDDDDGEVAAMAQH 284


>02_01_0490 + 3541056-3542276
          Length = 406

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +2

Query: 98  TLSSAPASIGPWSXTMTCSTARKCSVXXLKTSISACLMCLPSSGGPFRAFWPSTRPIAPL 277
           T  SA  S  P   T T +T  + S      S+   L+ L  +GG       S   +APL
Sbjct: 142 TKPSASTSASP--STATAATPSRSSNSSAARSLK--LLLLQRNGGRASGAAASDLSVAPL 197

Query: 278 LRTSPKAESALT 313
           LR S  +E++L+
Sbjct: 198 LRDSSDSEASLS 209


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 182 LKTSISACLMCLPSSGGPFRA 244
           LK++ +ACL C  SS  P+RA
Sbjct: 278 LKSAFAACLKCTHSSAEPWRA 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,679,590
Number of Sequences: 37544
Number of extensions: 242602
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)