Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C10
         (493 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    25   1.4  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   2.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   5.7  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    22   9.9  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     22   9.9  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    22   9.9  

>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 118 RWCRRKCDRIPRAPQRRGATQRFATAAWQMAL 23
           +WCRR  DR+ R    +G T  F + + ++A+
Sbjct: 811 QWCRRILDRVQRL-LAQGITSAFHSTSCEVAV 841


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 216 FHLREVHSGHSGLRQDL 266
           FHL +V SGH   R DL
Sbjct: 938 FHLSQVLSGHGFFRDDL 954


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 216 FHLREVHSGHSGLRQDL 266
           FHL +V SGH  LR+ L
Sbjct: 929 FHLSQVLSGHGFLREYL 945


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 216  FHLREVHSGHSGLRQDL*H 272
            FHL +V SGH   R  L H
Sbjct: 977  FHLAQVLSGHGFFRDYLCH 995


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 266 IAPLLRTSPKAESALTSSI 322
           +A +LR+ PKA  ALT+++
Sbjct: 12  VAMILRSLPKAFDALTTAL 30


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 216  FHLREVHSGHSGLRQDL 266
            FHL +V SGH   R+ L
Sbjct: 989  FHLSQVLSGHGFFREHL 1005


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 444,483
Number of Sequences: 2352
Number of extensions: 9029
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43554477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)