Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C10
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  AICHAAVANRCVAPRRCG 80
           +I H+A A RC+A RR G
Sbjct: 75  SINHSACAIRCLAQRRKG 92


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 166 MFRKXVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASANITQGGIGFNFVNLRMKSERG 345
           M RK +  L  ++   P+    + +  +    T++     ITQ G G  F+ ++   ERG
Sbjct: 461 MNRKQISELESNMQISPNELKPNDKSQVIKQNTWTVFRDAITQTGTGPAFLTIKEWIERG 520

Query: 346 S 348
           +
Sbjct: 521 T 521


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 9    RCQLFSAICHAAVANRCVAPRRCGARGMRSH 101
            R  ++  + H A   RC  P R G+    SH
Sbjct: 1685 RRHMYEELNHCAPNRRCPPPPRMGSAEGLSH 1715


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 248 WPSTRPIAPLL 280
           +PS RP APLL
Sbjct: 877 FPSVRPFAPLL 887


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   RPADASCSVPFAMLQLQI 54
           RP+D + S PF  L L +
Sbjct: 308 RPSDGATSEPFPFLMLPL 325


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 1   RPADASCSVPFAMLQLQI 54
           RP+D + S PF  L L +
Sbjct: 308 RPSDGATSEPFPFLMLPL 325


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 222 LREVHSGHSGLR 257
           LRE+H  ++GLR
Sbjct: 287 LREIHLAYNGLR 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,213
Number of Sequences: 438
Number of extensions: 2058
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)