Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C09
         (799 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.         48   3e-07
EF426175-1|ABO26418.1|  155|Anopheles gambiae unknown protein.         24   6.3  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   6.3  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   6.3  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   6.3  

>AY994095-1|AAX86008.1|  144|Anopheles gambiae unknown protein.
          Length = 144

 Score = 48.0 bits (109), Expect = 3e-07
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = +2

Query: 671 EPLYVARAVHEGATIPXKLVPSHGCAYVPWGGIEHGKPQYXIL 799
           E LYV RA HEG+    K+  SH C Y+P+GG E   P Y +L
Sbjct: 99  EILYVGRAYHEGSQTIGKVQCSHNCIYIPYGGAEVSVPTYEVL 141



 Score = 35.5 bits (78), Expect = 0.002
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 659 DCSXEPLYVARAVHEGATIPXKLVPSHGCAYVPWGGIE 772
           D     ++V RA H G  +P K++P    AYV +GG E
Sbjct: 24  DSDGAQIFVGRAHHAGDLLPAKVIPDKTAAYVAYGGQE 61


>EF426175-1|ABO26418.1|  155|Anopheles gambiae unknown protein.
          Length = 155

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 436 FPSLLRRSLHRLGCHRLLENRSATDCTCSSCIVRST 543
           F +LL +S+  L C++     S +DC  S+  V  T
Sbjct: 16  FGALLAQSVSALRCYQCASPSSWSDCQASAQSVECT 51


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 277 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 307


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 277 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 307


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 273 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,506
Number of Sequences: 2352
Number of extensions: 16736
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)