Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_C09
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    28   0.087
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.20 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.62 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 28.3 bits (60), Expect = 0.087
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 78  NHGSCHGCGNSCQPSIPILPXFQVD 152
           N    H   N+CQPSIP+ P F  D
Sbjct: 102 NTPEVHQAINTCQPSIPLEPDFTSD 126


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -1

Query: 424 RPGYEWNSFTLASSGDNAAIPTNPKTTIFPSVKNS----GAFNFNLIGLGSIFPDDALSV 257
           RP Y   +    S+  + ++P +P  +    V++S    G  + NL+    + P+ +L  
Sbjct: 222 RPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQP 281

Query: 256 SPASNHHLIHRIRXLRACRERDV 188
           S AS+H  +       AC    V
Sbjct: 282 SLASHHSHLSSALGRSACHSPGV 304


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
 Frame = -3

Query: 707  HLREQHEPHTEALXSSPVLPQRRQEVLDLLKHQPIYRLLQ----------TEGVRFLRSL 558
            H +  H  H  +  SS    Q++Q VL  L  Q + + +Q           +GV+ ++ +
Sbjct: 806  HQQSHHGLHINSSPSSVQSGQQQQSVLQGLGVQGVQQGVQGVQTAQGVQGVQGVQGVQGV 865

Query: 557  QGSQGVLRTMQLLQ-VQSV 504
            QG QGV     LLQ VQ V
Sbjct: 866  QGVQGVQGVPGLLQGVQQV 884


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 315 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 223
           LSIS L  L +FFL+     P   +    +G
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLG 300


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 394  LASSGDNAAIPTNPKTTIFPSVK 326
            +ASS  N    T   TTI P VK
Sbjct: 949  VASSASNVTNVTTNLTTILPPVK 971


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,348
Number of Sequences: 438
Number of extensions: 5146
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)