Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C08
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 162 2e-41
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 89 2e-19
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 86 2e-18
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 83 1e-17
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 81 5e-17
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 75 5e-15
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 60 2e-10
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 30 0.17
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 29 0.30
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 2.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 4.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 4.8
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 24 8.5
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 162 bits (394), Expect = 2e-41
Identities = 74/139 (53%), Positives = 101/139 (72%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
A N G+ SV + G + A V +Q+KVPD+L+D ++V H+F +T IGCVMTG IAD+R+Q
Sbjct: 29 AFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQ 88
Query: 183 VQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPC 362
V RAR EAA ++YK G +P +L +R+A+I+QV TQ A MRPLG +M L+A DDE GP
Sbjct: 89 VSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPS 148
Query: 363 VYKTDPSGYYCSYKAVXAG 419
++K DP+G+Y YKA AG
Sbjct: 149 LFKLDPAGFYIGYKATSAG 167
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 89.4 bits (212), Expect = 2e-19
Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
A+N G+ SV ++ TD V+A ++K L AS+ + A+T IG V +GM D R
Sbjct: 27 AVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVL 85
Query: 183 VQRARYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXG 356
V ++R + A YK Y P IL + IA + Q TQ+ +RP G S+ L+A DE G
Sbjct: 86 VDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSL-LVAGMDEKG 143
Query: 357 PCVYKTDPSGYYCSYKAVXAG 419
P +Y+ DPSG Y ++KA G
Sbjct: 144 PSLYQVDPSGTYFAWKATAIG 164
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 86.2 bits (204), Expect = 2e-18
Identities = 42/130 (32%), Positives = 69/130 (53%)
Frame = +3
Query: 30 VALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAA 209
+ ++ D ++A ++ V +LL P + ++ IG TG I D + V+RAR EA
Sbjct: 37 IGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEAT 96
Query: 210 NWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPCVYKTDPSGY 389
+W+ YGS IP ++ R+ + Q++T + +RP G + YD E GP +Y +P+G
Sbjct: 97 SWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGV 155
Query: 390 YCSYKAVXAG 419
Y Y AG
Sbjct: 156 YWGYNGAAAG 165
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 83.4 bits (197), Expect = 1e-17
Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +3
Query: 18 GLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRAR 197
G ++ALRG + V+ +RK +L + ++ + + + + G+ AD+R + +AR
Sbjct: 30 GTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKAR 89
Query: 198 YEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYD-DEXGPCVYKT 374
EA N + + + L R +A + Q YTQ+ +RP G S ++ +D + P VY+T
Sbjct: 90 VEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQT 149
Query: 375 DPSGYYCSYKAVXAG 419
+P+G Y ++KA G
Sbjct: 150 EPAGIYNAWKATAIG 164
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 81.4 bits (192), Expect = 5e-17
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 1/140 (0%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPA-SVTHLFALTDRIGCVMTGMIADSRS 179
AIN G+ ++ + D V+AA++KV +LL+ S L+ + D + C + G+ AD+
Sbjct: 27 AINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANI 85
Query: 180 QVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGP 359
+ AR + + E+P L RR+ D+ Q YTQ +RP G S + +D G
Sbjct: 86 LINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGY 145
Query: 360 CVYKTDPSGYYCSYKAVXAG 419
+++++PSG Y S++A G
Sbjct: 146 QLFQSNPSGNYGSWQANSIG 165
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 74.9 bits (176), Expect = 5e-15
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Frame = +3
Query: 18 GLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRAR 197
G ++ ++ DA V+ ++++ L++ SV LF + IGC ++G+ AD+R+ ++ AR
Sbjct: 34 GSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHAR 93
Query: 198 YEAANWQYKYGSEIPVHILCRRIADISQVY------TQNAXMRPLGCSMMLIAYDDEXGP 359
+ N ++ Y + + I D++ + + RP G + +LIA DE GP
Sbjct: 94 VQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVA-LLIAGIDEHGP 152
Query: 360 CVYKTDPSGYYCSYKAVXAGA 422
+Y ++PSG Y Y+A G+
Sbjct: 153 QLYHSEPSGTYFRYEAKAIGS 173
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 59.7 bits (138), Expect = 2e-10
Identities = 40/140 (28%), Positives = 63/140 (45%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
AI QG + T A +VA +R + + L + D IG + G+ D+R
Sbjct: 28 AIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKKLIRIDDHIGIAIAGLAPDARVL 84
Query: 183 VQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPC 362
+ EA + + + IPV L ++A+ +Q+ TQ RP G ++I Y DE GP
Sbjct: 85 SNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGY-DESGPH 143
Query: 363 VYKTDPSGYYCSYKAVXAGA 422
+ + PSG Y G+
Sbjct: 144 LLEFQPSGLVLEYLGTSMGS 163
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 29.9 bits (64), Expect = 0.17
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +3
Query: 156 GMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLI 335
GM +R+ Q +E +W Y + V LCR + ++ N + + LI
Sbjct: 606 GMCPYTRAVSQHVEWENDSWMYVLNVSLQVAKLCRHVGNVFMELNTNKLANAINYLISLI 665
Query: 336 AY 341
Y
Sbjct: 666 LY 667
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 29.1 bits (62), Expect = 0.30
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 176 VSSTTSSL*GCQLAVQVW--VRDTCAYLMQTHS*YLSSLHPKCXDETSGL 319
++S ++ + G QLA ++W +RDTC++L + Y+ S+ D L
Sbjct: 520 IASNSAKIQG-QLATEIWAVLRDTCSFLQGSSGPYVGSVSTIAKDALESL 568
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 210 WQPHSELVVLETGYQQSSR 154
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 4.8
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +3
Query: 102 ASVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQ 281
A++ +L+ +I CV AD Q QR + + + G P HI I + S+
Sbjct: 508 ANLLNLYPDLQKIPCVFAATKADLDRQQQRYPVQPDEFTKQLGLPSPTHISTAAIWNTSK 567
Query: 282 VY 287
+
Sbjct: 568 EF 569
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 109 TEAGSSSLSGTLR*AATTAASVPRNATDXN 20
T+AG+ +LS L A TAAS P N N
Sbjct: 543 TKAGNEALSVPLSGARNTAASRPTNLAAGN 572
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.2 bits (50), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 108 VTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQ 218
+ H +RI C M M+ADS S+ + EAA Q
Sbjct: 272 IEHNIPEGNRITC-MVAMLADSNSEPKNVEDEAAKRQ 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,636,206
Number of Sequences: 5004
Number of extensions: 27973
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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