Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C08
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 153 6e-38
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 2e-22
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 89 2e-18
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 73 7e-14
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 29 1.2
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12) 27 8.5
>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
Length = 224
Score = 153 bits (371), Expect = 6e-38
Identities = 80/135 (59%), Positives = 93/135 (68%)
Frame = +3
Query: 15 GGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRA 194
GGL SV +RG D+AVV Q+KVP L P ADSRSQVQRA
Sbjct: 35 GGLTSVGIRGADSAVVVTQKKVP--LPIPQ--------------------ADSRSQVQRA 72
Query: 195 RYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPCVYKT 374
RYEAANW+YK+G EIPV +LC+RIADISQVYTQNA MRPLGC M+LI D+E GP +YKT
Sbjct: 73 RYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGIDEEKGPQLYKT 132
Query: 375 DPSGYYCSYKAVXAG 419
DP+GY+C +KA G
Sbjct: 133 DPAGYFCGFKACSVG 147
>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 101 bits (243), Expect = 2e-22
Identities = 44/53 (83%), Positives = 50/53 (94%)
Frame = +3
Query: 162 IADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGC 320
+ADSRSQVQRARYEAANW+YK+G EIPV +LC+R+ADISQVYTQNA MRPLGC
Sbjct: 25 VADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77
>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 215
Score = 88.6 bits (210), Expect = 2e-18
Identities = 43/134 (32%), Positives = 73/134 (54%)
Frame = +3
Query: 18 GLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRAR 197
G +V +RG + V+ +RK +L +P +V + L D + G+ AD+R V +AR
Sbjct: 31 GSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKICTLDDHVLMAFAGLTADARILVNKAR 90
Query: 198 YEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPCVYKTD 377
E + + + + + R IA + Q YTQ+ RP G S +++ +D + P +Y+TD
Sbjct: 91 VECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGFDFDGTPRLYQTD 150
Query: 378 PSGYYCSYKAVXAG 419
PSG Y ++K V +G
Sbjct: 151 PSGTYHAWKVVQSG 164
>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
Length = 308
Score = 73.3 bits (172), Expect = 7e-14
Identities = 37/111 (33%), Positives = 60/111 (54%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
A+ G ++A+R D V ++ V +L + + +F + IG + G+IADSR
Sbjct: 159 AVENSG-TAIAIRCKDGVVFGVEKLVLSKLYEYGANKRIFHIDTHIGMAIAGLIADSRQI 217
Query: 183 VQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLI 335
V AR EAAN++ YGS IP+ L R++ +T + MRP GC + ++
Sbjct: 218 VATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAMRPFGCRIYVV 268
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 225 YGSEIPVHILCRRIADISQV--YTQNAXMRPLGCSMMLIAYDDEXGPCVYKTDPSGYYC 395
YG+ ++ + I D+ Y RPLGC +Y D G K PSGY+C
Sbjct: 1948 YGNCSALYDIHTGIGDVCPTGHYCPIGSARPLGCPAG--SYQDNKGMSHCKDCPSGYFC 2004
>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 369 CTHRARXHHRTLSASYCNPEV 307
C+H+ HH SAS CN V
Sbjct: 309 CSHKTAVHHPKTSASSCNASV 329
>SB_6255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 27.5 bits (58), Expect = 4.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -2
Query: 342 RTLSASYCNPEVSSXHFGCKLERYQLCVCIRYAQVSRTHTCTASWQPHSELVVLETGYQQ 163
+TL S E+ F +R++L C Y TH CT +W P S L E G
Sbjct: 415 KTLGESVKYVEMKIKSFPTATKRWELTFCPFYR--IWTH-CTVTWSPVSGLKYYENGVLT 471
Query: 162 SS 157
+S
Sbjct: 472 AS 473
>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 303 MRPLGCSMMLIAYDDEXGPCVYKTDPS 383
+RP G S+++ +DD+ P +++ DPS
Sbjct: 3 VRPFGVSLLVAGWDDDR-PYLFQCDPS 28
>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
Length = 660
Score = 26.6 bits (56), Expect = 8.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 360 CVYKTDPSGYYCSYKAV 410
C+Y+TDP G C ++V
Sbjct: 487 CLYRTDPKGIICEQRSV 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,212
Number of Sequences: 59808
Number of extensions: 242579
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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