Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C08
(424 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 156 5e-39
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 95 2e-20
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 83 8e-17
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 83 8e-17
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 70 8e-13
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 60 6e-10
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 53 7e-08
Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 27 5.5
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 27 5.5
Z48809-8|CAA88748.2| 535|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z48795-8|CAA88732.2| 535|Caenorhabditis elegans Hypothetical pr... 26 9.7
AC006808-2|AAY86282.1| 80|Caenorhabditis elegans Hypothetical ... 26 9.7
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 156 bits (379), Expect = 5e-39
Identities = 67/139 (48%), Positives = 101/139 (72%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
AIN L +VA++G DAAV+A Q++VPD L+ +VT ++ ++ +GC GMI D++ Q
Sbjct: 31 AINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQ 90
Query: 183 VQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPC 362
++RA+ EAA+W+YK G ++P +L +++AD++Q YTQNA MR LGC+++ I+YDDE GP
Sbjct: 91 IKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPE 150
Query: 363 VYKTDPSGYYCSYKAVXAG 419
VY+ DP+GYY K V G
Sbjct: 151 VYRVDPAGYYRGMKGVSVG 169
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 94.7 bits (225), Expect = 2e-20
Identities = 49/141 (34%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTH-LFALTDRIGCVMTGMIADSRS 179
AI+ G + + ++ VVAA+RK +LLD + +T ++ L+D I C + G+ AD+
Sbjct: 27 AISHAGTC-LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANI 85
Query: 180 QVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGP 359
+ R+ AA+++ YG E+PV L + + + Q YTQ RP G S++ I +D G
Sbjct: 86 LINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGY 145
Query: 360 CVYKTDPSGYYCSYKAVXAGA 422
+Y++DPSG Y +KA G+
Sbjct: 146 QLYQSDPSGNYTGWKATCIGS 166
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 83.0 bits (196), Expect = 8e-17
Identities = 42/134 (31%), Positives = 69/134 (51%)
Frame = +3
Query: 18 GLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRAR 197
G +V +RG D V+ ++K L D ++ + + D + G+ AD+R V RAR
Sbjct: 30 GSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRAR 89
Query: 198 YEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPCVYKTD 377
E +++ + V + R IA+ Q +TQ+ RP G SM++ +D + P ++KT+
Sbjct: 90 IECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTE 149
Query: 378 PSGYYCSYKAVXAG 419
PSG Y Y A G
Sbjct: 150 PSGAYYEYVANATG 163
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 83.0 bits (196), Expect = 8e-17
Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Frame = +3
Query: 12 QGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQR 191
+ G SV LR D V+A + V L D ++ IGCV +GM D R V++
Sbjct: 29 KNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVE--QISKHIGCVYSGMGPDFRILVKK 85
Query: 192 ARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXG-PCVY 368
AR A ++ YG E+P L IA + Q YTQ+ +RP G S+++ +D G P ++
Sbjct: 86 ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145
Query: 369 KTDPSGYYCSYKAVXAG 419
+ DPSG Y ++KA G
Sbjct: 146 QCDPSGAYFAWKATALG 162
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 69.7 bits (163), Expect = 8e-13
Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Frame = +3
Query: 18 GLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQVQRAR 197
G S+ ++ ++ ++AA+++ +L+ ++ + + IG G+IADSR+ V+RA+
Sbjct: 34 GSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQ 93
Query: 198 YEAANWQYKYGSEIPVHILCRRIADISQVY----TQNAXMRPLGCSMMLIAYDDEXGPCV 365
EA N+ + Y +I V + + +A+++ + + + RP G +M+ D E G +
Sbjct: 94 IEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKL 152
Query: 366 YKTDPSGYYCSYKAVXAGA 422
+ DPSG + KA GA
Sbjct: 153 FHLDPSGTFIDCKAKSIGA 171
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 60.1 bits (139), Expect = 6e-10
Identities = 33/139 (23%), Positives = 62/139 (44%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
A++ G +A+RG + VV A + + +L + +F + D +G + G D +
Sbjct: 30 AVDNAGTM-IAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFAL 88
Query: 183 VQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPC 362
A EA W Y +P+ + +A+ ++T RP G ++++ + G
Sbjct: 89 KNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGIS-RPFGAGAFFMSWNKQTGGR 147
Query: 363 VYKTDPSGYYCSYKAVXAG 419
++ +PSG YKA G
Sbjct: 148 LFLVEPSGLNYEYKAWAVG 166
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 53.2 bits (122), Expect = 7e-08
Identities = 33/140 (23%), Positives = 64/140 (45%)
Frame = +3
Query: 3 AINQGGLXSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFALTDRIGCVMTGMIADSRSQ 182
A+ QG +V ++ AV+ A ++ + L + ++ + G + G+++D R
Sbjct: 28 AMKQGSA-TVGIKSETHAVIVALKRAQNDL--SSHQKKVYEIDTHAGVSIAGLLSDGRIL 84
Query: 183 VQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAXMRPLGCSMMLIAYDDEXGPC 362
+ + E ++W++ Y +P+ L + Q TQ RP G +++ YD + G
Sbjct: 85 ARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKD-GAH 143
Query: 363 VYKTDPSGYYCSYKAVXAGA 422
+ +TDPS S GA
Sbjct: 144 IIQTDPSAEVVSMHGTSIGA 163
>Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical
protein F08G12.2 protein.
Length = 331
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +2
Query: 179 SSTTSSL*GC--QLAVQVWVRDT--CAYLMQTHS*YLSSLHP 292
++ +SSL C +V+VW +T CA +TH+ +++++HP
Sbjct: 90 TTDSSSLVSCGTDKSVRVWDMETGTCARRFRTHTDFVNAVHP 131
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/84 (15%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 30 VALRGTDAAVVAAQRKVPDRLLDPAS-VTHLFALTDRIGCVMTGMIADSRSQVQRARYEA 206
VA+ G + +A+ ++ +++ A+ + +TD++ + G +D+R+ +++ +
Sbjct: 12 VAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRK 71
Query: 207 ANWQYKYGSEIPVHILCRRIADIS 278
++ + I +L I++++
Sbjct: 72 NLYELRENRNIKPQVLSEMISNLA 95
>Z48809-8|CAA88748.2| 535|Caenorhabditis elegans Hypothetical
protein T01E8.1 protein.
Length = 535
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 345 HRTLSASYCNPEVSSXHFGCKL 280
H LSAS C+ V S +FGC +
Sbjct: 40 HDQLSASDCSTLVCSKYFGCNI 61
>Z48795-8|CAA88732.2| 535|Caenorhabditis elegans Hypothetical
protein T01E8.1 protein.
Length = 535
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 345 HRTLSASYCNPEVSSXHFGCKL 280
H LSAS C+ V S +FGC +
Sbjct: 40 HDQLSASDCSTLVCSKYFGCNI 61
>AC006808-2|AAY86282.1| 80|Caenorhabditis elegans Hypothetical
protein Y58G8A.5 protein.
Length = 80
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 336 LSASYCNPEVSSXHFGCKLERY 271
LSA C P VS+ H G +L+++
Sbjct: 21 LSACTCAPSVSAHHLGLRLKKW 42
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,929
Number of Sequences: 27780
Number of extensions: 169358
Number of successful extensions: 396
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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