Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_C06
(755 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 257 2e-67
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 255 1e-66
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 240 2e-62
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 236 4e-61
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 233 3e-60
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 232 6e-60
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 229 6e-59
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 226 4e-58
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 221 1e-56
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 219 8e-56
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 215 1e-54
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 212 9e-54
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 210 2e-53
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 207 3e-52
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 203 3e-51
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 202 6e-51
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 198 2e-49
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 190 2e-47
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 186 5e-46
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 184 2e-45
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 184 2e-45
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 184 2e-45
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 182 6e-45
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 175 7e-43
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 171 1e-41
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 171 1e-41
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 171 2e-41
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 166 5e-40
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 163 6e-39
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 161 2e-38
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 156 5e-37
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 156 6e-37
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 155 8e-37
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 155 1e-36
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 137 3e-31
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 133 4e-30
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 130 4e-29
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 127 3e-28
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 124 2e-27
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 119 9e-26
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 118 1e-25
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 114 3e-24
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 113 3e-24
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 111 2e-23
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 109 5e-23
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 109 1e-22
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 108 2e-22
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 106 5e-22
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 106 5e-22
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 105 2e-21
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 104 3e-21
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 103 4e-21
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 102 8e-21
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 101 1e-20
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 100 4e-20
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 99 6e-20
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 98 2e-19
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 97 5e-19
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 96 1e-18
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 94 4e-18
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 94 4e-18
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 93 5e-18
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 93 5e-18
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 93 9e-18
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 91 2e-17
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 91 4e-17
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 89 8e-17
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 89 8e-17
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 89 1e-16
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 88 2e-16
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 87 3e-16
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 87 3e-16
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 87 6e-16
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 86 1e-15
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 85 1e-15
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 81 2e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 3e-14
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 80 5e-14
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 79 9e-14
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 79 9e-14
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 79 9e-14
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 79 9e-14
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 78 3e-13
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 76 8e-13
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 76 1e-12
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 76 1e-12
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 74 3e-12
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 73 1e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 1e-11
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 72 1e-11
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 71 3e-11
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 70 7e-11
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 64 4e-09
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 59 1e-07
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 4e-04
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 46 0.001
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 42 0.016
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 40 0.088
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 38 0.27
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 36 0.82
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 34 4.4
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 33 5.8
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 33 7.6
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 257 bits (630), Expect = 2e-67
Identities = 134/224 (59%), Positives = 146/224 (65%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
F G+ +G++GTS SL IRA G PGSLIG QIYN VTAHA
Sbjct: 17 FIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFG 76
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH
Sbjct: 77 NWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHG 136
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 137 GSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSL 196
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 722
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 197 PVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 255 bits (624), Expect = 1e-66
Identities = 133/220 (60%), Positives = 143/220 (65%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++GTS SL IR G PGSLIG QIYN VTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 734
+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 240 bits (588), Expect = 2e-62
Identities = 129/232 (55%), Positives = 145/232 (62%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
G +G+IGT+ SL IRA G PG+L+G QIYN VTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 83
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGAS 143
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 144 VDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPVL 203
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG G+I
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMI 255
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 236 bits (578), Expect = 4e-61
Identities = 125/232 (53%), Positives = 142/232 (61%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
G +G++GT+ SL IRA PG+L+G QIYN VTAHA N L
Sbjct: 23 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWL 82
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPVL 202
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG GII
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGII 254
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 233 bits (570), Expect = 3e-60
Identities = 124/238 (52%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Frame = +3
Query: 45 SLFFL-GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXX 221
+L+ L G +G++GT+ SL IRA G PG+L+G IYN VTAHA
Sbjct: 17 TLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIG 76
Query: 222 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL+ N
Sbjct: 77 GFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNY 136
Query: 402 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 581
+H G SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 137 SHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLL 196
Query: 582 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG G+I
Sbjct: 197 LSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMI 254
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 232 bits (568), Expect = 6e-60
Identities = 122/232 (52%), Positives = 142/232 (61%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
G +G++GT+ SL IRA PG+L+G QIYN VTAHA N L
Sbjct: 23 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWL 82
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G S
Sbjct: 83 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGAS 142
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 143 VDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPVL 202
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG G+I
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMI 254
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 229 bits (560), Expect = 6e-59
Identities = 120/235 (51%), Positives = 140/235 (59%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
F G+ SG++G S SL IR G PGSLIG QIYN VT+HA
Sbjct: 4 FMFGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFG 63
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS + H
Sbjct: 64 NWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHG 123
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 124 GMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSL 183
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPG GII
Sbjct: 184 PVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGII 238
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 226 bits (553), Expect = 4e-58
Identities = 118/237 (49%), Positives = 141/237 (59%), Gaps = 2/237 (0%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLI--GAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F G +G++GT S+ IR PG I G Q+YN +TAHA
Sbjct: 21 FIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGG 80
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 404
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVYPPLS +
Sbjct: 81 FGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITS 140
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
H G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 141 HSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLL 200
Query: 585 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPG GII
Sbjct: 201 SLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGII 257
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 221 bits (540), Expect = 1e-56
Identities = 120/214 (56%), Positives = 139/214 (64%)
Frame = -2
Query: 697 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 518
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 517 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 338
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 337 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTXX 158
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 157 L*I*AAPINEPGLPNXARMKRLKDVPMMPEXRPK 56
L I + PI PG PN AR+K L DVP MP PK
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPK 212
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 219 bits (534), Expect = 8e-56
Identities = 116/231 (50%), Positives = 138/231 (59%), Gaps = 2/231 (0%)
Frame = +3
Query: 69 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 242
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 422
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 603 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
GAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PG G++
Sbjct: 204 GAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMV 254
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 215 bits (525), Expect = 1e-54
Identities = 114/234 (48%), Positives = 139/234 (59%), Gaps = 2/234 (0%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 233
G SG++G S+ IR P + L+G QIYN +TAHA N
Sbjct: 29 GAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGN 88
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 413
LVP+++G+PD+AFPR+NNI F +VE G GTG TVYPPLSS +H G
Sbjct: 89 WLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSG 148
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
+VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 149 GAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAVP 208
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPG G+I
Sbjct: 209 VLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGFGMI 262
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 212 bits (517), Expect = 9e-54
Identities = 113/214 (52%), Positives = 127/214 (59%)
Frame = +3
Query: 57 LGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 236
LG+ SG+IGT+ SL IR G PGS IG Q+YN VTAHA N
Sbjct: 5 LGIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNW 64
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N AH G
Sbjct: 65 LVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGP 124
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 125 SVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPV 184
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 698
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 185 LAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 210 bits (514), Expect = 2e-53
Identities = 115/237 (48%), Positives = 137/237 (57%), Gaps = 2/237 (0%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F L + SG+ GT+ SL IR PGS L G +Q++N V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 404
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 585 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PG GII
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGFGII 255
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 207 bits (505), Expect = 3e-52
Identities = 112/237 (47%), Positives = 136/237 (57%), Gaps = 2/237 (0%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F L L SG+ G++ S+ IR PGS L G +Q++N V HA
Sbjct: 19 FMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGG 78
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 404
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
H G SVDLAIFSLHL ISS S ++PLFV A+ ITAF
Sbjct: 139 HSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLL 198
Query: 585 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+ IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PG GI+
Sbjct: 199 SLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGFGIV 255
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 203 bits (496), Expect = 3e-51
Identities = 111/232 (47%), Positives = 130/232 (56%), Gaps = 1/232 (0%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
L +G+IGT+ S+ IR PG I Q+YN +TAHA N L
Sbjct: 24 LFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFL 83
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
+PL LG PD+ FPR+NNI + +ENG GTG T+YPPLS +H G S
Sbjct: 84 LPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPS 143
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VDLAIF LHL+GISS +L LF AV ITA
Sbjct: 144 VDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLPVL 203
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PG GII
Sbjct: 204 AGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGII 255
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 202 bits (494), Expect = 6e-51
Identities = 109/223 (48%), Positives = 131/223 (58%), Gaps = 1/223 (0%)
Frame = +3
Query: 45 SLFFL-GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXX 221
SL+ + G SG IGT+ S+ IR +PGS++G +YN VTAHA
Sbjct: 18 SLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIG 77
Query: 222 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL+S
Sbjct: 78 GFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQ 137
Query: 402 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 581
AH G SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 138 AHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLL 197
Query: 582 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 710
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 198 LSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 198 bits (482), Expect = 2e-49
Identities = 109/249 (43%), Positives = 133/249 (53%), Gaps = 1/249 (0%)
Frame = +3
Query: 12 FLLQIIKLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPG-SLIGAAQIYNXXVTAHAXXX 188
FL K A L SG++GT+ S+ IR PG I Q+YN +T+H
Sbjct: 33 FLSSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIM 92
Query: 189 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG 368
N L+P+++G PD+AFPR+NN+ + I+ENG GTG
Sbjct: 93 IFFMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTG 152
Query: 369 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 548
T+YPPLS +H VDL IF LHL+GISS +L LF
Sbjct: 153 WTLYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFG 212
Query: 549 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYI 728
AV ITA A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYI
Sbjct: 213 WAVVITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYI 272
Query: 729 LILPGXGII 755
LI+PG GII
Sbjct: 273 LIIPGFGII 281
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 190 bits (464), Expect = 2e-47
Identities = 101/236 (42%), Positives = 121/236 (51%), Gaps = 2/236 (0%)
Frame = +3
Query: 54 FLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXX 227
F G+ +G + S+ +R PG L G YN T H
Sbjct: 23 FFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGF 82
Query: 228 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAH 407
N VP+++GAPD++FPR+NN F E G GTG TVYPPLSS +H
Sbjct: 83 GNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSH 142
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 143 SGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVA 202
Query: 588 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPG G++
Sbjct: 203 IPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLV 258
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 186 bits (453), Expect = 5e-46
Identities = 102/212 (48%), Positives = 121/212 (57%), Gaps = 2/212 (0%)
Frame = +3
Query: 69 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 242
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 422
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 603 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF 698
GAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 204 GAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 184 bits (449), Expect = 2e-45
Identities = 96/233 (41%), Positives = 131/233 (56%), Gaps = 2/233 (0%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 236
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P G++
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVV 272
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 184 bits (449), Expect = 2e-45
Identities = 96/233 (41%), Positives = 131/233 (56%), Gaps = 2/233 (0%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 236
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P G++
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVV 272
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 184 bits (449), Expect = 2e-45
Identities = 104/231 (45%), Positives = 127/231 (54%), Gaps = 2/231 (0%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F L + SG+ GT+ SL IR PGS L G +Q++N V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 404
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS A
Sbjct: 79 FGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQA 138
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
H G SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 139 HSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLL 198
Query: 585 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 737
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 199 SLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 182 bits (444), Expect = 6e-45
Identities = 103/236 (43%), Positives = 127/236 (53%), Gaps = 5/236 (2%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFGNPG-SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
L SG++GT+ S+ IR PG I Q+YN +TAHA N L
Sbjct: 52 LFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFL 111
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAH 407
+PL++G PD+AFPR+NNI F I+E G GTG T+ YPPLS +H
Sbjct: 112 MPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSH 171
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G SVDLAIF+LHL+G+SS +L LF +
Sbjct: 172 SGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATWSS 224
Query: 588 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PG GII
Sbjct: 225 RSRYFLGITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGII 280
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 175 bits (427), Expect = 7e-43
Identities = 99/222 (44%), Positives = 120/222 (54%), Gaps = 2/222 (0%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F L L SG+ GT+ SL IR PG L G Q++N V HA
Sbjct: 19 FLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGG 78
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 404
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYPPL+S A
Sbjct: 79 FGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQA 138
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
H G SVDLAIF+LH+ ISS + +LPLFV A+ ITA
Sbjct: 139 HSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLL 198
Query: 585 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 710
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 199 TLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 171 bits (417), Expect = 1e-41
Identities = 95/200 (47%), Positives = 112/200 (56%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
G +G++GT+ SL IRA PG+L+G QIYN VTAHA N L
Sbjct: 12 GAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWL 71
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL+ N+AH G S
Sbjct: 72 IPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGAS 131
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 132 VDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPVL 191
Query: 600 AGAITILLTDRNLNTSFFDP 659
A IT+LLTDRNLNT+FFDP
Sbjct: 192 AAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 171 bits (417), Expect = 1e-41
Identities = 96/217 (44%), Positives = 119/217 (54%), Gaps = 4/217 (1%)
Frame = +3
Query: 117 GNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
G +L A ++N +TAH N VP+++GAPD+AFPR+NNI
Sbjct: 82 GPSATLDQAYHLWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNIS 141
Query: 297 FXXXXXXXXXXXXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
F V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 142 FWLLIPAFALLLGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASS 200
Query: 465 XXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNT 644
+ ++PLFV +V +TAF A AIT+LLTDRN T
Sbjct: 201 ILGAINFITTILNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGT 260
Query: 645 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+F+D AGGGDP LYQHLF FFGHPEVYI+ILPG GII
Sbjct: 261 TFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGFGII 297
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 171 bits (415), Expect = 2e-41
Identities = 87/229 (37%), Positives = 123/229 (53%), Gaps = 2/229 (0%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGA--AQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPL 248
++ T+ +A G L G ++N +T H N +PL
Sbjct: 132 MLATANPAEAQALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPL 191
Query: 249 ILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDL 428
++GAPD+AFPR+NN+ + +++ GAG G T YPP+S+ R+VD
Sbjct: 192 MIGAPDMAFPRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDF 251
Query: 429 AIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGA 608
AIF++H++G SS + ++PLF +V +TA+ AGA
Sbjct: 252 AIFAVHVSGASSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGA 311
Query: 609 ITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
IT+LLTDRN T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP G+I
Sbjct: 312 ITMLLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVI 360
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 166 bits (404), Expect = 5e-40
Identities = 96/231 (41%), Positives = 119/231 (51%), Gaps = 2/231 (0%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F L S +IGT S IR N GS L G Q +N +TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 404
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY PL+ +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQS 143
Query: 405 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 584
H G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 144 HSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLL 203
Query: 585 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 737
A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 204 SLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 163 bits (395), Expect = 6e-39
Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 4/229 (1%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 236
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 737
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 161 bits (390), Expect = 2e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 606 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 713
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 156 bits (379), Expect = 5e-37
Identities = 90/232 (38%), Positives = 124/232 (53%), Gaps = 2/232 (0%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 236
L SG++G S S+ +R NP L+ Q++N +TAHA N
Sbjct: 40 LFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANY 99
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H G
Sbjct: 100 LVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGS 159
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 160 SIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPV 219
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 220 LAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 156 bits (378), Expect = 6e-37
Identities = 85/235 (36%), Positives = 115/235 (48%), Gaps = 2/235 (0%)
Frame = +3
Query: 57 LGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
LG +G+ G+ S+ IR +PG G+ Q+YN +T H
Sbjct: 31 LGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFG 90
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N ++PL+LGAP++AFPR+N + F + G G+ T YPPLS
Sbjct: 91 NWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQP 149
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
S+D I LH GI S + DQ+ +FV +T+F
Sbjct: 150 ELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSV 209
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP GII
Sbjct: 210 PVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGII 264
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 155 bits (377), Expect = 8e-37
Identities = 83/235 (35%), Positives = 118/235 (50%), Gaps = 1/235 (0%)
Frame = +3
Query: 54 FLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 233
++GL SG+ G S S +R +PG + +Y+ +T HA N
Sbjct: 23 YMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGN 82
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 413
+PL++ D++ PR+NN+ + G G G T+YPPLS++ G
Sbjct: 83 WFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDG 142
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXX 590
+DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 143 LPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSV 202
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP G+I
Sbjct: 203 PVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVI 257
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 155 bits (375), Expect = 1e-36
Identities = 87/244 (35%), Positives = 115/244 (47%), Gaps = 2/244 (0%)
Frame = +3
Query: 30 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFG--NPGSLIGAAQIYNXXVTAHAXXXXXXXX 203
K+ + + SG +G SLFIR G L G Q YN +T+H
Sbjct: 14 KMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFI 73
Query: 204 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 383
N +P++ G PD+ FPR+NN+ F + E G G G T+YP
Sbjct: 74 MPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYP 133
Query: 384 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 563
L H + D +F++HL GISS SF LF+ A I
Sbjct: 134 TLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALI 193
Query: 564 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPG 743
TA AG +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP
Sbjct: 194 TAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPV 253
Query: 744 XGII 755
G+I
Sbjct: 254 FGLI 257
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 137 bits (331), Expect = 3e-31
Identities = 86/235 (36%), Positives = 108/235 (45%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
F GL G IG SL IR +P + + +YN VT H
Sbjct: 118 FVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFG 177
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +P+ L D+ PR+N++ G G G T+YPPLS
Sbjct: 178 NYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGS 234
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD +FSLHLAG+SS S + V A T+
Sbjct: 235 GFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSL 289
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPG GI+
Sbjct: 290 PVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIV 344
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 133 bits (322), Expect = 4e-30
Identities = 79/245 (32%), Positives = 112/245 (45%), Gaps = 3/245 (1%)
Frame = +3
Query: 30 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLI---GAAQIYNXXVTAHAXXXXXXX 200
K+ S +L G+IG S+ IR G I +IYN T H
Sbjct: 18 KIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFN 77
Query: 201 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 380
N L P++LG D+ +PR+N +E G+GTG T+Y
Sbjct: 78 IMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLY 137
Query: 381 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 560
PPLS+++++ G +D IF L AGI+S D++ ++
Sbjct: 138 PPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIV 195
Query: 561 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 740
+T+F ++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILP
Sbjct: 196 LTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILP 255
Query: 741 GXGII 755
G GII
Sbjct: 256 GFGII 260
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 130 bits (314), Expect = 4e-29
Identities = 81/234 (34%), Positives = 111/234 (47%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
F LG+ S ++G S SL R P L + +YN VT H
Sbjct: 17 FSLGIFSALLGMSFSLLFRLQLAFPSIL--TSDVYNAFVTLHGLVMVFFAAMPTAIGFFA 74
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N L+P PD+ FPR+N + F ++ + A G T YPPLSS
Sbjct: 75 NLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----L 125
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
SV+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 126 SPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSL 183
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP G+
Sbjct: 184 PVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGL 237
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 127 bits (306), Expect = 3e-28
Identities = 70/203 (34%), Positives = 99/203 (48%), Gaps = 1/203 (0%)
Frame = +3
Query: 150 IYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
+YN T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 330 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 506
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 507 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 686
+ L + ++ IT+ G + +LL+D + NT FFDP GDPILY
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 687 QHLF*FFGHPEVYILILPGXGII 755
QHLF FFGHPEVYILILP G+I
Sbjct: 238 QHLFWFFGHPEVYILILPAFGVI 260
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 124 bits (299), Expect = 2e-27
Identities = 74/181 (40%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Frame = +3
Query: 69 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 242
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 422
P+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H G SV
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSV 143
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
DLAIFSLHL+GISS + +LPLFV A+ +TA A
Sbjct: 144 DLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSLPVLA 203
Query: 603 G 605
G
Sbjct: 204 G 204
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 119 bits (286), Expect = 9e-26
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 6/239 (2%)
Frame = +3
Query: 54 FLGLCSGIIGTSXSLFIRAXFGNPGSLI----GAAQIYNXXVTAHAXXXXXXXXXXXXXX 221
++G +GI+G S+ IR G I IYN +T H
Sbjct: 27 YMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIG 86
Query: 222 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSN 398
N L+P+++G +++ PR+N I F ++ +G T+YPPLS+
Sbjct: 87 FYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTR 146
Query: 399 IAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 575
A G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 147 DADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSIL 206
Query: 576 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP G+
Sbjct: 207 LIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGL 263
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 118 bits (285), Expect = 1e-25
Identities = 75/223 (33%), Positives = 99/223 (44%), Gaps = 6/223 (2%)
Frame = +3
Query: 105 RAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 284
R FG G +IG A Y T H N L+PL++GA D+AFPR+
Sbjct: 72 RLLFGESG-VIGPAT-YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRL 129
Query: 285 NNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 461
N F G AG G T Y PLS+N+ G L + ++ + G+S
Sbjct: 130 NMYSFWTFLLSQLLVLASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVS 189
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S ++ +LPL + + +TA A +LL DR+
Sbjct: 190 STMGAVNYITTVIRLRAPGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFG 249
Query: 642 TSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGXGII 755
T FF GGGDPIL+QHLF FGHPEVYI+ILP GI+
Sbjct: 250 TEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWGIL 292
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 114 bits (274), Expect = 3e-24
Identities = 70/226 (30%), Positives = 98/226 (43%)
Frame = +3
Query: 78 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G +L +R P + + +++N T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
A D+AFPR+N+ F + + G Y PLSS + VD I
Sbjct: 108 ARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWII 167
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
L + GI S S ++PLFV + + A A+ +
Sbjct: 168 GLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAM 227
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
LL DR L ++FFDP GG +L+QH F FGHPEVYILILPG G+I
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMI 273
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 113 bits (273), Expect = 3e-24
Identities = 83/240 (34%), Positives = 110/240 (45%), Gaps = 8/240 (3%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
GL + +G + +R +PG + + YN +T+H N L
Sbjct: 105 GLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NYL 163
Query: 240 VPLILGAPDIAFPRINNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS-----S 395
+PL++GA D+AFPRIN I F I E A TG T+Y PLS
Sbjct: 164 IPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGMG 223
Query: 396 NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFX 575
N A+ G VDL + LHL+G+S+ S+ L +F + +
Sbjct: 224 NQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSGL 281
Query: 576 XXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AI +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GII
Sbjct: 282 ILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGII 339
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 111 bits (267), Expect = 2e-23
Identities = 71/228 (31%), Positives = 101/228 (44%), Gaps = 1/228 (0%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G +L IR PG I A YN T H N ++PL+L
Sbjct: 58 LVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLML 117
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D+AFPR+N + ++ G TG T Y P S AH +V +
Sbjct: 118 GAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVL 173
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
F + G SS ++ ++PLFV A+ T+ G +
Sbjct: 174 FGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPVI-GLLL 232
Query: 615 ILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP G++
Sbjct: 233 VLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVM 280
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 109 bits (263), Expect = 5e-23
Identities = 72/227 (31%), Positives = 95/227 (41%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+IG +L +R G P + +YN T H N +VPL++
Sbjct: 47 LIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMI 105
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D+AFPR+N + V G Y PL+ VD I
Sbjct: 106 GARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWI 165
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ L G++S + +++PLFV + AF A
Sbjct: 166 VGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATI 225
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GII
Sbjct: 226 QLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGII 272
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 109 bits (261), Expect = 1e-22
Identities = 73/226 (32%), Positives = 96/226 (42%)
Frame = +3
Query: 78 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
IG S + +R P ++YN +T H N L+PL++G
Sbjct: 44 IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVG 102
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
D+AFPR+N + F V G T YPPLS G +L I
Sbjct: 103 TEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWIL 159
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
SL L G SS +PLF A+ T+ A A+ +
Sbjct: 160 SLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALIL 219
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
L D TSFF+P GGGDP++YQHLF F+ HP VYI+ILP G+I
Sbjct: 220 LSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVI 265
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 108 bits (259), Expect = 2e-22
Identities = 65/209 (31%), Positives = 93/209 (44%)
Frame = +3
Query: 123 PGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG + + YN +T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 662
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 663 GGGDPILYQHLF*FFGHPEVYILILPGXG 749
GGDP++YQ++F F+ HP VY+ +LP G
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQVLPVFG 208
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 106 bits (255), Expect = 5e-22
Identities = 67/226 (29%), Positives = 95/226 (42%)
Frame = +3
Query: 78 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G +L +R P + YN T H LVPL++G
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDRYNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVG 104
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
IAFPR+N + V+ G G Y PLS G+ D+
Sbjct: 105 TRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQ 164
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
+ +S+ S D++PLFV ++ +T+F A T
Sbjct: 165 MITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTS 224
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++
Sbjct: 225 LILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMV 270
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 106 bits (255), Expect = 5e-22
Identities = 66/226 (29%), Positives = 96/226 (42%)
Frame = +3
Query: 78 IGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G +L IR PG I A YN T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
A D+AFP++N + F +V+ GA TG T Y P S+ + V L F
Sbjct: 112 AKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAF 170
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
L G SS + +LPLFV ++ T+ ++ +
Sbjct: 171 IL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLL 227
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+ + FDPA GGDP+L+QH F F+ HP VYI++LP +I
Sbjct: 228 VAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVI 273
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 105 bits (251), Expect = 2e-21
Identities = 67/222 (30%), Positives = 98/222 (44%), Gaps = 2/222 (0%)
Frame = +3
Query: 96 LFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 275
L +R + + +YN +T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 276 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 449
PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
RN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIV 308
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 104 bits (249), Expect = 3e-21
Identities = 66/229 (28%), Positives = 97/229 (42%), Gaps = 3/229 (1%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G ++ +R P + + +YN T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVD 425
GAPD+AFP++N F G A +G YPP+S + + H
Sbjct: 111 GAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEF 170
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
L I ++ L+GISS F ++P+FV G
Sbjct: 171 LWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTG 230
Query: 606 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP GI
Sbjct: 231 GAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGI 279
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 103 bits (248), Expect = 4e-21
Identities = 66/245 (26%), Positives = 105/245 (42%)
Frame = +3
Query: 18 LQIIKLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXX 197
+ I+ L A FFL +G ++FIR P + +AQ YN +T H
Sbjct: 27 IAILYLVAGGFFFL------VGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80
Query: 198 XXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
N +VPL +GA D++FP +N + F + G T
Sbjct: 81 AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139
Query: 378 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 557
Y LS + +G +D + L ++G+ + ++ +LPLF
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTT 197
Query: 558 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 737
+ + + +++ DR T+FF+P GG+ ++++HLF FGHPEVYILIL
Sbjct: 198 FVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILIL 257
Query: 738 PGXGI 752
P GI
Sbjct: 258 PAFGI 262
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 102 bits (245), Expect = 8e-21
Identities = 73/242 (30%), Positives = 103/242 (42%), Gaps = 1/242 (0%)
Frame = +3
Query: 33 LXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXX 212
+ + S FFLG G++ +L IRA PG + + +N T H
Sbjct: 47 IMSFSFFFLG---GLM----ALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPI 99
Query: 213 XXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPL 389
N ++PL +GAPD+AFPR+N F + GA G T+Y PL
Sbjct: 100 VWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPL 158
Query: 390 SSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITA 569
S I G D+ I + GI S + ++P+F + + +
Sbjct: 159 SDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVS 218
Query: 570 FXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
A +L DR L +DPA GG +L+QHLF FFGHPEVY+L LP G
Sbjct: 219 VLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFG 277
Query: 750 II 755
I+
Sbjct: 278 IV 279
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 101 bits (243), Expect = 1e-20
Identities = 69/227 (30%), Positives = 96/227 (42%), Gaps = 2/227 (0%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+I S +L R P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLA 431
GA D+AFPR+N + + E+GA G T+Y PL++ I G +DLA
Sbjct: 96 GARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLA 155
Query: 432 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 611
++ L +S + ++P+F ++ T
Sbjct: 156 ALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGG 215
Query: 612 TILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G
Sbjct: 216 ALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALG 260
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 100 bits (239), Expect = 4e-20
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 1/222 (0%)
Frame = +3
Query: 93 SLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 272
SL IR P + + YN +T H N +VPL+LGA D+A
Sbjct: 46 SLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVA 105
Query: 273 FPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 449
PR+N + GA G T Y P S A VD + ++ L
Sbjct: 106 LPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILL 162
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
G SS S ++P++V +V + A ++L +
Sbjct: 163 LGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLE 222
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
R + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI+
Sbjct: 223 RKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGIL 264
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 99 bits (238), Expect = 6e-20
Identities = 61/181 (33%), Positives = 86/181 (47%), Gaps = 6/181 (3%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 407
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 588 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 753 I 755
+
Sbjct: 264 V 264
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 98.3 bits (234), Expect = 2e-19
Identities = 58/138 (42%), Positives = 70/138 (50%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
F G+ SG++GTS SL IR G PGSL+ Q+YN VTAH
Sbjct: 4 FIFGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFG 63
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVPL+LGAPD+AFPR+NN+ F + G + PL
Sbjct: 64 NWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISA 121
Query: 411 GRSVDLAIFSLHLAGISS 464
G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 96.7 bits (230), Expect = 5e-19
Identities = 66/220 (30%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Frame = +3
Query: 141 AAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 320
A + Y VT HA N L+PL++GA D+AFP +N + +
Sbjct: 84 APEFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAF 143
Query: 321 XXXXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 488
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 144 FFFGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYM 203
Query: 489 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 659
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 204 TTIIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGL 263
Query: 660 --------AGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
AGGG P+L+QHLF F+ HP VYI+ILP G++
Sbjct: 264 VVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMV 303
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 95.9 bits (228), Expect = 1e-18
Identities = 53/111 (47%), Positives = 64/111 (57%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*L 239
G +G+IGT+ SL IRA G PG+L+G Q N VTAHA N L
Sbjct: 24 GAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWL 83
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 392
VPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 84 VPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 93.9 bits (223), Expect = 4e-18
Identities = 60/227 (26%), Positives = 93/227 (40%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+I +L +R P + +++ YN T H L+PL++
Sbjct: 71 LIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMI 129
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D+ FPR+ + + + G +Y PLS++ G S D +
Sbjct: 130 GARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWL 189
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ LA I+S S ++P+ + + TAF
Sbjct: 190 IGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSI 249
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G++
Sbjct: 250 LLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMV 296
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 93.9 bits (223), Expect = 4e-18
Identities = 75/244 (30%), Positives = 101/244 (41%), Gaps = 16/244 (6%)
Frame = +3
Query: 72 GIIGTSXSLFIRAXFGNPG--SLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVP 245
G++ S +R G PG S I A Q Y +T H N L+P
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIP 111
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGR 416
L++GA D+ FP +N + + V G G G T+YPP + S +
Sbjct: 112 LMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDW 171
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXX 593
+ L + SL L I + +LPL V + T
Sbjct: 172 GIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPA 231
Query: 594 XXAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPG 743
G++ +LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP
Sbjct: 232 LFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPA 290
Query: 744 XGII 755
GI+
Sbjct: 291 FGIV 294
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 93.5 bits (222), Expect = 5e-18
Identities = 61/227 (26%), Positives = 89/227 (39%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G ++ IRA P S + YN T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G+ D+AFPR+ F + +G +YPPLSS + G + D +
Sbjct: 104 GSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWL 163
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S ++P+F +TA
Sbjct: 164 IGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSI 223
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G I
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAI 270
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 93.5 bits (222), Expect = 5e-18
Identities = 71/208 (34%), Positives = 83/208 (39%)
Frame = +3
Query: 81 GTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 260
G L R G +IG QI VTA A L PL +GA
Sbjct: 20 GXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGA 79
Query: 261 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 440
P +A PR+ N+ F + G G VYPP SS +AH +VDL IF
Sbjct: 80 PXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFX 139
Query: 441 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 620
LHLAGISS ++ LF A AIT+L
Sbjct: 140 LHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITML 199
Query: 621 LTDRNLNTSFFDPAGGGDPILYQHLF*F 704
R N SFF P G P + F F
Sbjct: 200 XXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 92.7 bits (220), Expect = 9e-18
Identities = 62/224 (27%), Positives = 88/224 (39%)
Frame = +3
Query: 81 GTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 260
G L +RA P + + YN T H N +VPL +GA
Sbjct: 71 GGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGA 129
Query: 261 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 440
D+AFP +NN+ F ++ G T Y PL+SN G + +
Sbjct: 130 RDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLG 189
Query: 441 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 620
L +AGI + + ++P+F IT A+ +L
Sbjct: 190 LQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALL 249
Query: 621 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
DR FF GG P+L+ +LF +GHPEVYI+ILP GI
Sbjct: 250 SFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGI 293
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 91.5 bits (217), Expect = 2e-17
Identities = 61/227 (26%), Positives = 91/227 (40%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G +L +R P + + Y+ T H N L PL+L
Sbjct: 65 LLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLML 123
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G+ D+AFPR+ + + G Y PL+S G ++D+
Sbjct: 124 GSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYG 183
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ L GIS+ S D+LP+ V + + A
Sbjct: 184 LGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFL 243
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+
Sbjct: 244 LLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIV 290
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 90.6 bits (215), Expect = 4e-17
Identities = 60/227 (26%), Positives = 91/227 (40%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+IG ++ IRA +P S A+ Y T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G+ D+A+PR++ F + +G +YPPL+S + G + D +
Sbjct: 104 GSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWL 163
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S D++P++ +TA
Sbjct: 164 LGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSI 223
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G I
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAI 270
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 89.4 bits (212), Expect = 8e-17
Identities = 63/231 (27%), Positives = 92/231 (39%), Gaps = 4/231 (1%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G + +R PG + A+ +N T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSV 422
GA D+AFPR+N + ++ G G Y L+S G
Sbjct: 104 GARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGP 163
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
D L L GI + + ++P+FV +T+
Sbjct: 164 DFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVT 223
Query: 603 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GII
Sbjct: 224 VALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGII 274
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 89.4 bits (212), Expect = 8e-17
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 1/227 (0%)
Frame = +3
Query: 78 IGTSXSLFIRAXFGNPGS-LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+G + +L IRA PG+ I + +N T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
D+A+P++N I F + T PP S I+ G + D+ I
Sbjct: 96 RYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWI 149
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
F L + GISS S Q+PL + ++ A A+
Sbjct: 150 FGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALL 209
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++
Sbjct: 210 MLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 88.6 bits (210), Expect = 1e-16
Identities = 60/227 (26%), Positives = 90/227 (39%)
Frame = +3
Query: 75 IIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
I+G +L +R P + + YN + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G D+ FPR+N + ++ G YPPL+ G +D
Sbjct: 111 GTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYT 170
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S +++P+FV AV + +F A
Sbjct: 171 TVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASL 230
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++
Sbjct: 231 MLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMV 276
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 88.2 bits (209), Expect = 2e-16
Identities = 79/271 (29%), Positives = 109/271 (40%), Gaps = 30/271 (11%)
Frame = +3
Query: 30 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNP-----------GSLIGAA-----QIYNX 161
K+ A F G+ +IG SL R G P G I A + Y
Sbjct: 45 KVIAKQFLFTGIFWAVIGGLMSLVFRLQLGFPEMSMEFLRPILGGWITEAGKLEPEFYLA 104
Query: 162 XVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXX 341
VT H N L+PL +GA D+A +N + +
Sbjct: 105 LVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVIMFASI 164
Query: 342 IVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 509
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 165 FLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITTVINLR 224
Query: 510 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----AG---- 665
SF +LPL + A ITA A +L+ DR+L TSFF AG
Sbjct: 225 VKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALH 284
Query: 666 --GGDPILYQHLF*FFGHPEVYILILPGXGI 752
GG P+L+QHLF F GHPEVYI+++P GI
Sbjct: 285 HQGGSPVLFQHLFWFLGHPEVYIVLIPALGI 315
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 87.4 bits (207), Expect = 3e-16
Identities = 54/174 (31%), Positives = 77/174 (44%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP GI
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGI 298
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 87.4 bits (207), Expect = 3e-16
Identities = 65/250 (26%), Positives = 99/250 (39%)
Frame = +3
Query: 6 NAFLLQIIKLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXX 185
N ++ I+ + A LFF+ +GI+G L +R P + + YN T H
Sbjct: 38 NNQVIGILYVGAAFLFFI--LAGILG----LIMRTQLAVPENDLVGQDFYNQIFTVHGTT 91
Query: 186 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 365
L+P +L A D+ FPR++ +
Sbjct: 92 MMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKG 150
Query: 366 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 545
G +YPPL+ G + D + + IS+ S ++P+F
Sbjct: 151 GWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIF 210
Query: 546 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 725
A+ I A A +L +R+ FF GGDP+L+QHLF FFGHPEVY
Sbjct: 211 AWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVY 270
Query: 726 ILILPGXGII 755
I+ LP G++
Sbjct: 271 IIFLPAAGLV 280
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 86.6 bits (205), Expect = 6e-16
Identities = 70/236 (29%), Positives = 99/236 (41%), Gaps = 3/236 (1%)
Frame = +3
Query: 57 LGLCSGIIGTSXSLFIR--AXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXX 230
LG+ + IIG+ + IR F N + A Y+ VT H
Sbjct: 26 LGIVALIIGSVNAALIRDQLSFNN----LNAVDYYDA-VTLHGIFMIFFVVMPLSTGFA- 79
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 407
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIA 196
Query: 588 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLV 252
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 85.8 bits (203), Expect = 1e-15
Identities = 62/234 (26%), Positives = 96/234 (41%), Gaps = 3/234 (1%)
Frame = +3
Query: 48 LFFLG-LCSGIIGTSXSLFIRAXFGNPGSLI-GAAQIYNXXVTAHAXXXXXXXXXXXXXX 221
L+ +G + + + ++ IR G I +YN + H
Sbjct: 20 LYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTG 79
Query: 222 XXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
N +PL++GA D+AFPR+N + + + T YPP S I
Sbjct: 80 FFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-I 138
Query: 402 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 581
H + FS+ L G +S +++L +FV A + AF
Sbjct: 139 THGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQ 195
Query: 582 XXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 740
G A+T+L D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP
Sbjct: 196 LIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLP 249
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 85.4 bits (202), Expect = 1e-15
Identities = 53/174 (30%), Positives = 75/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP G+
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGV 297
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 81.4 bits (192), Expect = 2e-14
Identities = 49/173 (28%), Positives = 75/173 (43%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMV 339
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 426 LAIFS 440
LAI+S
Sbjct: 61 LAIYS 65
Score = 60.5 bits (140), Expect = 4e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 545 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 712
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 80.2 bits (189), Expect = 5e-14
Identities = 53/174 (30%), Positives = 73/174 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
L DR L+ FF GG+ + + ++F FGHPEVYILILP G+
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGV 317
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 79.4 bits (187), Expect = 9e-14
Identities = 58/232 (25%), Positives = 84/232 (36%)
Frame = +3
Query: 57 LGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN* 236
LG C +G +L IR P + YN +T HA N
Sbjct: 45 LGFC---LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNY 101
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
+PL LG D+A PR+N G T Y PL+ + G
Sbjct: 102 FLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGV 161
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SV + L+ G+ S ++P+F ++ T+
Sbjct: 162 SVFMVAVILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGG 219
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
A + + L S F+P GG P+LYQ F F+ HP VY+++LP GI
Sbjct: 220 LTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 79.4 bits (187), Expect = 9e-14
Identities = 64/229 (27%), Positives = 92/229 (40%), Gaps = 16/229 (6%)
Frame = +3
Query: 117 GNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
G PG ++ + Y +T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 297 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 461
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 642 TSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGXGII 755
TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI+
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIV 302
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 79.4 bits (187), Expect = 9e-14
Identities = 55/226 (24%), Positives = 90/226 (39%)
Frame = +3
Query: 63 LCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 242
LC+G++ ++ +R PG+ +A +N T H L+
Sbjct: 73 LCAGVL----AVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LL 127
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 422
P +LGA D+ FPR++ + + + +G +YPPL++ G
Sbjct: 128 PALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGS 185
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
D+ + L ++S + +PL+ V +
Sbjct: 186 DIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLI 245
Query: 603 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 740
+ +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 246 AGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 79.4 bits (187), Expect = 9e-14
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Frame = +3
Query: 366 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 536
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 537 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 716
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 717 EVYILILPGXGII 755
EVY+LI+P G I
Sbjct: 403 EVYVLIIPTFGFI 415
Score = 40.7 bits (91), Expect = 0.038
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +3
Query: 30 KLXAHSLFFLGLCSGIIGTSXSLFIRAXFGNPGSLI--GAAQIYNXXVTAHAXXXXXXXX 203
K A + + + +G+ G + + IR +P S G + Y VTAH
Sbjct: 61 KRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVV 120
Query: 204 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 299
N L+P +G+ D+A+PR+N+I F
Sbjct: 121 VPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 77.8 bits (183), Expect = 3e-13
Identities = 49/174 (28%), Positives = 75/174 (43%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ + DR L+T F+ GG +LY +L +GHPEVYILILP GI
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGI 292
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 76.2 bits (179), Expect = 8e-13
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 413
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXG 749
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTG 281
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 75.8 bits (178), Expect = 1e-12
Identities = 55/217 (25%), Positives = 83/217 (38%), Gaps = 14/217 (6%)
Frame = +3
Query: 147 QIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 327 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 665
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 666 -------GGDPILYQHLF*FFGHPEVYILILPGXGII 755
GG P+L+QHLF F+ HP VYI++LP G++
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMV 306
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +3
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPG G+I
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMI 231
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 74.1 bits (174), Expect = 3e-12
Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Frame = +3
Query: 69 SGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN*LV 242
+ +IGT+ S+ IR PG L G Q+YN +TAHA N LV
Sbjct: 24 AAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLV 83
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
P+++GAPD+AFPR+NNI F VE GAGTG TV LS I
Sbjct: 84 PVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Frame = +3
Query: 60 GLCSGIIGTSXSLFIRAXFGNPGSLI--GAAQIYNXXVTAHAXXXXXXXXXXXXXXXXXN 233
G +G++GT S+ IR PG+ I G Q+YN +TAHA N
Sbjct: 25 GAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGN 84
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 85 WFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 384 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 563
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 564 TAFXXXXXXXXXAGAITILLTDR 632
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 218 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 343
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 72.1 bits (169), Expect = 1e-11
Identities = 46/119 (38%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F L S +IGT S IR N GS L G Q +N +TAHA
Sbjct: 24 FIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGG 83
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 84 FGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 70.9 bits (166), Expect = 3e-11
Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 13/250 (5%)
Frame = +3
Query: 45 SLFFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
+LFFL + G +L R + G+ + + YN V+ H
Sbjct: 33 ALFFL-----VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGF 87
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN-- 398
N LVPL +GA D+AFPR+N + + G T+Y PL++
Sbjct: 88 A-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAY 146
Query: 399 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 578
I G + +L + + +P+F ++ +T +
Sbjct: 147 IPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMM 206
Query: 579 XXXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVY 725
A+ IL +D L T++F D G +L+ HLF FFGHPEVY
Sbjct: 207 LFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVY 266
Query: 726 ILILPGXGII 755
I+ P G++
Sbjct: 267 IVFFPALGVM 276
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 69.7 bits (163), Expect = 7e-11
Identities = 46/175 (26%), Positives = 72/175 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGII 755
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP G I
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFI 317
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 64.1 bits (149), Expect = 4e-09
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHAXXXXXXXXXXXXXXX 224
F + G+ GT+ S+ IR PG+ L G Q++N V HA
Sbjct: 19 FIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGG 78
Query: 225 XXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 79 FGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 342 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/41 (68%), Positives = 29/41 (70%)
Frame = +2
Query: 632 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIXYN 754
K KYIIF S W F+STFILIFWT SLYFNFT I YN
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYN 47
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +3
Query: 528 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 707
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 708 GHPEVYILIL 737
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 548 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 700
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 4e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +2
Query: 224 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 403
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 404 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 583
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 584 XTTCFSWSYYNIINRSKLKY 643
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 46.0 bits (104), Expect = 0.001
Identities = 39/172 (22%), Positives = 62/172 (36%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGXGI 752
+ L+D + F+ G P+ Y F F HPEVY+ ILP I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 41.9 bits (94), Expect = 0.016
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGSLIGAAQIYNXXVTAHA 179
F + SG+IG+S S+ IR GS++ + QIYN VT+HA
Sbjct: 4 FIFAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 40.3 bits (90), Expect = 0.050
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 591 XXXAGAITILLTDRNLNT 644
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 39.5 bits (88), Expect = 0.088
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +3
Query: 702 FFGHPEVYILILPGXGII 755
FFGHPEVYILILPG G+I
Sbjct: 2 FFGHPEVYILILPGFGMI 19
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 37.9 bits (84), Expect = 0.27
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTAHA 179
F L + SG+ GT+ SL IR PGS L G +Q++N V HA
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 36.3 bits (80), Expect = 0.82
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 702 FFGHPEVYILILPGXGII 755
FFGHPEVY+LILP GI+
Sbjct: 1 FFGHPEVYVLILPVFGIV 18
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.9 bits (74), Expect = 4.4
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 560 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 739
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 740 RI 745
I
Sbjct: 154 SI 155
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 33.5 bits (73), Expect = 5.8
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXVTA 173
F L + SG+ GT+ SL IR PGS L G +Q++N T+
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 33.1 bits (72), Expect = 7.6
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 51 FFLGLCSGIIGTSXSLFIRAXFGNPGS--LIGAAQIYNXXV 167
F L + SG+ GT+ SL IR PGS L G +Q++N V
Sbjct: 19 FMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,732,939
Number of Sequences: 1657284
Number of extensions: 9403868
Number of successful extensions: 20179
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 18556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19907
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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